Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing
Understanding how biodiversity changes in time and space is vital to assess the effects of
environmental change on benthic ecosystems. Due to the limitations of morphological …
environmental change on benthic ecosystems. Due to the limitations of morphological …
Metabarcoding successfully tracks temporal changes in eukaryotic communities in coastal sediments
IS Salonen, PM Chronopoulou… - FEMS Microbiology …, 2019 - academic.oup.com
Metabarcoding is a method that combines high-throughput DNA sequencing and DNA-
based identification. Previously, this method has been successfully used to target spatial …
based identification. Previously, this method has been successfully used to target spatial …
Influence of commercial DNA extraction kit choice on prokaryotic community metrics in marine sediment
GA Ramírez, D Graham… - Limnology and …, 2018 - Wiley Online Library
Commercial DNA extraction kits are widely used for cultivation‐free surveys of marine
sediment. However, the consequences of popular extraction‐kit choices for sequence …
sediment. However, the consequences of popular extraction‐kit choices for sequence …
Grab what you can—an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding
JT Hestetun, A Lanzén, TG Dahlgren - PeerJ, 2021 - peerj.com
Environmental DNA methods such as metabarcoding have been suggested as possible
alternatives or complements to the current practice of morphology-based diversity …
alternatives or complements to the current practice of morphology-based diversity …
High throughput shotgun sequencing of eRNA reveals taxonomic and derived functional shifts across a benthic productivity gradient
Benthic macrofauna is regularly used in monitoring programmes, however the vast majority
of benthic eukaryotic biodiversity lies mostly in microscopic organisms, such as meiofauna …
of benthic eukaryotic biodiversity lies mostly in microscopic organisms, such as meiofauna …
DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments
Human impact on marine benthic communities has traditionally been assessed using visible
morphological traits and has focused on the macrobenthos, whereas the ecologically …
morphological traits and has focused on the macrobenthos, whereas the ecologically …
High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems
Environmental diversity surveys are crucial for the bioassessment of anthropogenic impacts
on marine ecosystems. Traditional benthic monitoring relying on morphotaxonomic …
on marine ecosystems. Traditional benthic monitoring relying on morphotaxonomic …
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …
still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories …
Depth shapes α‐and β‐diversities of microbial eukaryotes in surficial sediments of coastal ecosystems
Little is known about the relative influence of historic processes and environmental gradients
on shaping the diversity of single‐celled eukaryotes in marine benthos. By combining …
on shaping the diversity of single‐celled eukaryotes in marine benthos. By combining …
To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments
Paleogenetics provides a powerful framework to reconstruct the long-term temporal
dynamics of various biological groups from aquatic sediments. However, validations are still …
dynamics of various biological groups from aquatic sediments. However, validations are still …