Kingdom-wide analysis of fungal protein-coding and tRNA genes reveals conserved patterns of adaptive evolution

R Wint, A Salamov, IV Grigoriev - Molecular biology and …, 2022 - academic.oup.com
Protein-coding genes evolved codon usage bias due to the combined but uneven effects of
adaptive and nonadaptive influences. Studies in model fungi agree on codon usage bias as …

[图书][B] Molecular identification of fungi

Y Gherbawy, K Voigt - 2010 - Springer
Fungi comprise a vast variety of microorganisms and are numerically among the most
abundant eukaryotes on Earth's biosphere. They enjoy great popularity in pharmaceutical …

The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications

Q Li, L Yang, D Xiang, Y Wan, Q Wu, W Huang… - International journal of …, 2020 - Elsevier
Laccaria amethystine and L. bicolor have served as model species for studying the life
history and genetics of ectomycorrhizal fungi. However, the characterizations and variations …

Pandora's mycological box: molecular sequences vs. morphology in understanding fungal relationships and biodiversity

DL Hawksworth - Revista Iberoamericana de Micología, 2006 - Elsevier
Fundamental reappraisals of diverse traditional ideas in mycology have become necessary
as a result of molecular insights. These different insights are discussed in relation to: the …

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

J Park, J Park, S Jang, S Kim, S Kong, J Choi… - …, 2008 - academic.oup.com
Genomes of more than 60 fungal species have been sequenced to date, yet there has been
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …

Mitogenome sequence accuracy using different elucidation methods

R Velozo Timbó, R Coiti Togawa, M MC Costa… - PloS one, 2017 - journals.plos.org
Mitogenome sequences are highly desired because they are used in several biological
disciplines. Their elucidation has been facilitated through the development of massive …

FungiDB: an integrated functional genomics database for fungi

JE Stajich, T Harris, BP Brunk, J Brestelli… - Nucleic acids …, 2012 - academic.oup.com
Abstract FungiDB (http://FungiDB. org) is a functional genomic resource for pan-fungal
genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic …

The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales

Q Li, W Xiao, P Wu, T Zhang, P Xiang, Q Wu, L Zou… - IMA fungus, 2023 - Springer
Apiotrichum is a diverse anamorphic basidiomycetous yeast genus, and its mitogenome
characterization has not been revealed. In this study, we assembled two Apiotrichum …

Analysis of the complete mitochondrial genome of Pochonia chlamydosporia suggests a close relationship to the invertebrate-pathogenic fungi in Hypocreales

R Lin, C Liu, B Shen, M Bai, J Ling, G Chen, Z Mao… - BMC microbiology, 2015 - Springer
Abstract Background The fungus Pochonia chlamydosporia parasitizes nematode eggs and
has become one of the most promising biological control agents (BCAs) for plant-parasitic …

The First Five Mitochondrial Genomes for the Family Nidulariaceae Reveal Novel Gene Rearrangements, Intron Dynamics, and Phylogeny of Agaricales

Z Li, T Xie, X Feng, Z Wang, C Lin, G Li, XZ Li… - International Journal of …, 2023 - mdpi.com
The family Nidulariaceae, consisting of five genera including Cyathus, is a unique group of
mushrooms commonly referred to as bird's nest fungi due to their striking resemblance to …