Agricultural matrix affects differently the alpha and beta structural and functional diversity of soil microbial communities in a fragmented Mediterranean holm oak forest

D Flores-Rentería, A Rincón, F Valladares… - Soil Biology and …, 2016 - Elsevier
Given the increase in habitat fragmentation in the Mediterranean forests, understanding its
impacts over the ecology of soil microbial communities, responsible for many ecosystem …

Deconstructing the soil microbiome into reduced-complexity functional modules

D Naylor, S Fansler, C Brislawn, WC Nelson… - MBio, 2020 - Am Soc Microbiol
The soil microbiome represents one of the most complex microbial communities on the
planet, encompassing thousands of taxa and metabolic pathways, rendering holistic …

Storage effects on the community level physiological profiles of Mediterranean forest soils

M Goberna, H Insam, JA Pascual, J Sánchez - Soil Biology and …, 2005 - Elsevier
Community level physiological profiles (CLPPs) have been implemented in many European
soil monitoring programmes as a rapid tool for the assessment of the functional properties of …

Shifts in substrate utilization potential and structure of soil microbial communities in response to carbon substrates

M Schutter, R Dick - Soil Biology and Biochemistry, 2001 - Elsevier
The Biolog assay is a popular tool for estimating carbon (C) substrate utilization potentials of
microbial communities of natural habitats, but its ecological relevance has been questioned …

[HTML][HTML] Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

P Plassart, NC Prévost-Bouré, S Uroz, S Dequiedt… - Scientific Reports, 2019 - nature.com
To better understand the relationship between soil bacterial communities, soil
physicochemical properties, land use and geographical distance, we considered for the first …

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi‐arid soils

F Bastida, IF Torres, JL Moreno, P Baldrian… - Molecular …, 2016 - Wiley Online Library
Biogeochemical processes and ecosystemic functions are mostly driven by soil microbial
communities. However, most methods focus on evaluating the total microbial community and …

Bacteria as emerging indicators of soil condition

SM Hermans, HL Buckley, BS Case… - Applied and …, 2017 - Am Soc Microbiol
Bacterial communities are important for the health and productivity of soil ecosystems and
have great potential as novel indicators of environmental perturbations. To assess how they …

Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

M Hartmann, F Widmer - Applied and Environmental Microbiology, 2006 - Am Soc Microbiol
Changes in the diversity and structure of soil microbial communities may offer a key to
understanding the impact of environmental factors on soil quality in agriculturally managed …

Evaluation of soil storage methods for soil microbial community using genetic and metabolic fingerprintings

H Cui, C Wang, Z Gu, H Zhu, S Fu, Q Yao - European journal of soil biology, 2014 - Elsevier
Soil microbes are essential functional components in soil ecosystems, involved in diverse
biogeochemical processes. Storage of soil samples for soil microbial community analysis is …

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

C Ai, S Zhang, X Zhang, D Guo, W Zhou, S Huang - Geoderma, 2018 - Elsevier
Nutrient availability and plant diversity are two important factors determining crop
productivity in agricultural ecosystems, but little is known about the underlying mechanisms …