Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation

S Uroz, P Ioannidis, J Lengelle, A Cébron, E Morin… - PloS one, 2013 - journals.plos.org
… This functional stratification according to the soil horizon was also confirmed by a … metagenomic
analyses. Together, our results suggest that the soil stratification and particularly the soil

Metagenomic sequencing of multiple soil horizons and sites in close vicinity revealed novel secondary metabolite diversity

SS Mantri, T Negri, H Sales-Ortells, A Angelov… - Msystems, 2021 - Am Soc Microbiol
… Amplicon analysis of specific genes of interest has proven to be an efficient and cost-effective
strategy for metagenomic analysis. Amplifying specific genes of interest allows high …

Longitudinal metagenomic analysis of the water and soil from Gulf of Mexico beaches affected by the Deep Water Horizon oil spill

W Widger, G Golovko, A Martinez, E Ballesteros… - Nature …, 2011 - nature.com
… in the analysis of environmental metagenomes were their … successfully applied to the
analysis of microbial composition of … -based analysis of the entire genomic material (metagenome) …

Ecological and genomic attributes of novel bacterial taxa that thrive in subsurface soil horizons

TE Brewer, EL Aronson, K Arogyaswamy, SA Billings… - MBio, 2019 - Am Soc Microbiol
… abundant in deeper soil horizons with low organic C concentrations. From our metagenomic
data, … TEB led the amplicon and shotgun metagenomic analyses along with the associated …

Distinct taxonomic and functional profiles of the microbiome associated with different soil horizons of a moist tussock tundra in Alaska

BM Tripathi, HM Kim1, JY Jung, S Nam, HT Ju… - Frontiers in …, 2019 - frontiersin.org
… of microbiomes between soil horizons and coring points, we used analysis of variance (…
Furthermore, our metagenome data showed a significant increase in relative abundance of …

Recent advances and perspectives in metagenomic studies of soil microbial communities

EV Pershina, EE Andronov, AG Pinaev… - Management of microbial …, 2013 - Springer
… of soil metagenome primarily by the analysis of soil microbial … spatial organization of soil
metagenome associated with micro… in soil can vary significantly depending on soil horizon and …

Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols

JM Young, T Skvortsov, BP Kelleher… - Science of the Total …, 2019 - Elsevier
… , this analysis makes it abundantly clear that soil horizon … Firstly, metagenomes are not
expected to be static over time, so … Our full metagenome data, for the first time, show that soil

The potential of metagenomic approaches for understanding soil microbial processes

DD Myrold, LH Zeglin… - Soil Science Society of …, 2014 - Wiley Online Library
… and bioinformatics analysis tools now enable the generation of a metagenome from … in soil.
The purpose of this review is to describe the steps involved in producing a soil metagenome, …

A metagenomic-based survey of microbial (de) halogenation potential in a German forest soil

P Weigold, M El-Hadidi, A Ruecker, DH Huson… - Scientific reports, 2016 - nature.com
… forest soil by shotgun metagenomic sequencing. Metagenomic libraries of three soil horizons
… samples 71 and metagenomics analyses of permafrost soils 72 . Bacterial reads in the …

Assessment of diversity indices for the characterization of the soil prokaryotic community by metagenomic analysis

TI Chernov, AK Tkhakakhova, OV Kutovaya - Eurasian soil science, 2015 - Springer
… The study of soil metagenomes is based on the isolation of … wide appli cation of metagenomics
for assessing the diversity of … for assessing the diversity of the soil bacterial metagenome. …