Biomolecular electrostatics—I want your solvation (model)

JP Bardhan - Computational Science & Discovery, 2012 - iopscience.iop.org
We review the mathematical and computational foundations for implicit-solvent models in
theoretical chemistry and molecular biophysics. These models are valuable theoretical tools …

Metal oxide solvation with ionic liquids: A solubility parameter analysis

F Rexhepi, M Woolever, J Nabity, S Banerjee - Journal of Molecular Liquids, 2023 - Elsevier
… observations, thus validating the model. The validated model demonstrates a novel approach
… While developing a model, if we use 5-fold cross-validation, 1 out of 5 datapoints is left out …

Hydration free energies and solvation structures with molecular density functional theory in the hypernetted chain approximation

S Luukkonen, M Levesque, L Belloni… - The Journal of Chemical …, 2020 - pubs.aip.org
… Reassembling those ideas in a consistent way and validating them for the systems studied
in this paper will be the focus of a forthcoming work. Finding an appropriate bridge functional …

Integration of theory and experiment in the modelling of heterogeneous electrocatalysis

S Hammes-Schiffer, G Galli - Nature Energy, 2021 - nature.com
… of validated structural models, each theoretical study … theory and experiments for simple
systems to help determine the choice of density functionals, pseudopotentials, solvation models

The validation of quantum chemical lipophilicity prediction of alcohols

M Michalík, V Lukeš - Acta Chimica Slovaca, 2016 - sciendo.com
… of obtained theoretical results was much more sensitive to the implicit solvation model selection
… We can conclude that the C-PCM and IEF-PCM implicit models seem unsuitable for the …

An overview of continuum models for nonequilibrium solvation: Popular theories and new challenge

XY Li - International Journal of Quantum Chemistry, 2015 - Wiley Online Library
… interplays among the representative models and analyzed what the … solvation were detailed,
and a few argumentative examples in literature were taken for the validation of our theory

Atomistic modeling of electrocatalysis: Are we there yet?

N Abidi, KRG Lim, ZW Seh… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
… for method validation, … the solvation model and the description of the adsorbate—electrode
interaction. This would, however, bring theoretical methods a significant step toward validation

Theory and structure of the metal-electrolyte interface incorporating adsorption and solvation effects

M Landstorfer, C Guhlke, W Dreyer - Electrochimica Acta, 2016 - Elsevier
… The Ag(110)|KPF 6 example serves to discuss some general aspects of our model and
validate our theory when no specific adsorption of ionic species occurs. Next, the Ag|NaClO 4 …

DOX_BDW: Incorporating Solvation and Desolvation Effects of Cavity Water into Nonfitting Protein–Ligand Binding Affinity Prediction

J Liu, J Wan, Y Ren, X Shao, X Xu… - … Information and Modeling, 2023 - ACS Publications
… mainly because of the unrealistic solvation model. We propose four DOX_X variants for the
PLBA prediction with different solvation models implemented and validated to find the best …

Validation of density functional modeling protocols on experimental bis(μ-oxo)/μ-η22-peroxo dicopper equilibria

JL Lewin, DE Heppner, CJ Cramer - JBIC Journal of Biological Inorganic …, 2007 - Springer
… In addition, we find that continuum solvation predicts the bis(μ-oxo) isomer to be better
solvated than the μ-η 2 :η 2 -peroxo isomer by about 1–4 kcal mol −1 in dichloromethane, with …