Computational solvation dynamics: Implementation, application, and validation
C Schröder, E Heid - Annual Reports in Computational Chemistry, 2020 - Elsevier
… is frequently used to study solvation dynamics experimentally and … behind the calculation of
solvation dynamics from molecular … of linear response theory within solvation dynamics in the …
solvation dynamics from molecular … of linear response theory within solvation dynamics in the …
Predicting site-binding modes of ions and water to nucleic acids using molecular solvation theory
… wake of success with validation of the method for … validated against crystallographic data
for ion channels and ion-counting measurements. With this new force field, the 3D-RISM model …
for ion channels and ion-counting measurements. With this new force field, the 3D-RISM model …
Force field validation using protein side chain prediction
MP Jacobson, GA Kaminski, RA Friesner… - The Journal of …, 2002 - ACS Publications
… We employ the SGB continuum solvation model, 9 which has previously been shown to
give good agreement with a Poisson−Boltzmann (PB) treatment of peptide conformational …
give good agreement with a Poisson−Boltzmann (PB) treatment of peptide conformational …
… solvation models for the calculation of hydration energies of molecules, polymers and surfaces: a comparison between the SMD, VASPsol and FDPB models
IC Oğuz, D Vassetti, F Labat - Theoretical Chemistry Accounts, 2021 - Springer
… continuum solvation models, namely the Solvation Model Density (… For finite molecular
systems, all three models have been considered… As a key criterion of the validation of a periodic …
systems, all three models have been considered… As a key criterion of the validation of a periodic …
INAQS, a generic interface for nonadiabatic QM/MM dynamics: design, implementation, and validation for GROMACS/Q-CHEM simulations
… To date, however, safely merging nonadiabatic dynamics with implicit solvation models
remains a theoretical challenge. For instance, most semiclassical approaches for nonadiabatic …
remains a theoretical challenge. For instance, most semiclassical approaches for nonadiabatic …
Molecular properties in solution described with a continuum solvation model
… Complex computational models, as PCM, require accurate checks during … a validation of
their performance. As we shall show in the following discussion, validation for solvation models …
their performance. As we shall show in the following discussion, validation for solvation models …
The cavity electromagnetic field within the polarizable continuum model of solvation: An application to the real-time time dependent density functional theory
… moments and rotatory strengths for a model system, the twisted ethylene. To validate our
approach we first compare the … Finally we also compare with the results of analytical models. …
approach we first compare the … Finally we also compare with the results of analytical models. …
MTS-MD of biomolecules steered with 3D-RISM-KH mean solvation forces accelerated with generalized solvation force extrapolation
I Omelyan, A Kovalenko - Journal of Chemical Theory and …, 2015 - ACS Publications
… The predictive capability of the 3D-RISM-KH theory has been validated for the solvation
structure and thermodynamics of chemical species and biomolecules in various solvents and …
structure and thermodynamics of chemical species and biomolecules in various solvents and …
KECSA-movable type implicit solvation model (KMTISM)
… To validate our model, … solvation models was not the focus of the present research, but a
general comparison helps put the present work in perspective relative to more advanced models…
general comparison helps put the present work in perspective relative to more advanced models…
[19] Free R value: Cross-validation in crystallography
AT Brünger - Methods in enzymology, 1997 - Elsevier
… Models of conformational variability and solvation represent … They validate the model
regardless of the fit to the diffraction data. … They validate the extent to which the model explains the …
regardless of the fit to the diffraction data. … They validate the extent to which the model explains the …