Machine learning in computational docking
… machine learning (ML) techniques in computational docking. The use of smart computational
… Central to this methodology is the notion of computational docking which is the process of …
… Central to this methodology is the notion of computational docking which is the process of …
[HTML][HTML] Protein–ligand docking in the machine-learning era
… Structure-based inhibitor design approaches often use molecular docking, a computational
procedure that efficiently predicts non-covalent interactions between macromolecules (…
procedure that efficiently predicts non-covalent interactions between macromolecules (…
Machine learning in computational chemistry
BB Goldman, WP Walters - Annual Reports in Computational Chemistry, 2006 - Elsevier
… of machine learning techniques that have recently appeared in the computational chemistry
… In these studies, a set of molecules is computationally docked into a protein active site. The …
… In these studies, a set of molecules is computationally docked into a protein active site. The …
Molecular insights into a mechanism of resveratrol action using hybrid computational docking/CoMFA and machine learning approach
… of computational receptor-based docking, ligand-based CoMFA/CoMSIA and Machine learning
… All computational docking, CoMFA/CoMSIA, and ML results from our current study were …
… All computational docking, CoMFA/CoMSIA, and ML results from our current study were …
A machine learning approach to predicting protein–ligand binding affinity with applications to molecular docking
PJ Ballester, JBO Mitchell - Bioinformatics, 2010 - academic.oup.com
… Molecular docking is a computational technique … docking has two stages: docking molecules
into the target's binding site (pose identification), and predicting how strongly the docked …
into the target's binding site (pose identification), and predicting how strongly the docked …
Modelling peptide–protein complexes: docking, simulations and machine learning
… the advances in docking, molecular simulations and machine learning to tackle problems …
computational methods that are routinely used to elucidate different aspects of PPIs: 1) docking…
computational methods that are routinely used to elucidate different aspects of PPIs: 1) docking…
Machine learning optimization of cross docking accuracy
EJ Bjerrum - Computational biology and chemistry, 2016 - Elsevier
… docking power using a supervised machine learning approach and a manually curated
database of ligands and cross docking … in a similar docking performance with regard to docking …
database of ligands and cross docking … in a similar docking performance with regard to docking …
Improving structure-based virtual screening with ensemble docking and machine learning
… its explicit representation in every docking run implies a high computational cost. Therefore,
a … is the approach known as ensemble docking. Ensemble docking consists of using a set of …
a … is the approach known as ensemble docking. Ensemble docking consists of using a set of …
Protein docking using surface matching and supervised machine learning
AJ Bordner, AA Gorin - Proteins: Structure, Function, and …, 2007 - Wiley Online Library
… A comprehensive docking procedure is described in which … the docked conformations using
a supervised machine learning … Computational docking methods, which provide structural …
a supervised machine learning … Computational docking methods, which provide structural …
A machine learning-based method to improve docking scoring functions and its application to drug repurposing
SL Kinnings, N Liu, PJ Tonge… - Journal of chemical …, 2011 - ACS Publications
… Therefore, the incorporation of atomic interaction features into the computational
framework presented in this paper may provide a better model of cooperativity in the future. …
framework presented in this paper may provide a better model of cooperativity in the future. …
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