… , direct RNA modification analysis by nanopore sequencing is … in RNA epitranscriptomics.
Thus, classical approaches are still widely used in the routine analysis of RNA modifications, …

… RNA species. In this brief overview, we consider techniques that utilize deep sequencing
for modification calling, … of RNA modifications ranges from antibody-(Ab)-based anti-methylated/…

… modification, maturation and degradation processes. Here, we focus on small RNA sequencing
… well known modified sites in tRNAs, we provide evidence that modified nucleotides are a …

… of RNA modifications. More recently, a method that detects inosine sites based only on RNA-seq
… of publicly available RNA-seq data and thus does not require deep sequencing of both …

… sequencing technologies, the use of high-throughput RNA-Seq10 has enabled the study of
some RNA modifications at … and deep sequencing that uses a chemical biology approach to …

… deep sequencing can distinguish several RNA base modifications in a single sequencing
… Our current methods employed ten different common RNA modifications, including all those …

… Deep sequencing was applied in a new concept of library preparation for detection of
RNA modifications. Modified RNA is treated by alkaline hydrolysis, dephosphorylated, and …

… types of base pair–disrupting RNA modifications and also captured by standard RNA-seq,
we used residual ribosomal RNA (rRNA) reads, present in most RNA-seq libraries (fig. S3), as …

… a sequencing-by-synthesis type of analysis. Thus, a particular behavior of RNA modified …
for their detection (and quantification) by deep sequencing, and RT properties have great …

… , researchers developed Pseudo-seq by labeling Ψ in uniformly fragmented RNA by CMC, …
the modified Ψ sites. Subsequent circularization, amplification and deep sequencing revealed …