Getting the right answers for the right reasons: Toward predictive molecular simulations of water with many-body potential energy functions
F Paesani - Accounts of Chemical Research, 2016 - ACS Publications
… energies are defined as the cluster energies minus the energies of the individual water
molecules … This comparison thus directly probes the actual interaction between water molecules …
molecules … This comparison thus directly probes the actual interaction between water molecules …
Conserving energy during molecular dynamics simulations of water, proteins, and proteins in water
DB Kitchen, F Hirata, JD Westbrook… - Journal of …, 1990 - Wiley Online Library
… the simulations. The current generation of simulations can handle proteins of molecular weight
… 20,000 solvated by several thousand water molecules. The technology has progressed to …
… 20,000 solvated by several thousand water molecules. The technology has progressed to …
Water simulation model with explicit three-molecule interactions
R Kumar, JL Skinner - The Journal of Physical Chemistry B, 2008 - ACS Publications
… potential surface for interacting water molecules is simply not … classical simulation model with
explicit two- and three-molecule … Thus the magnitudes of the two- and three-molecule terms …
explicit two- and three-molecule … Thus the magnitudes of the two- and three-molecule terms …
Molecular simulation of water in carbon nanotubes
A Alexiadis, S Kassinos - Chemical reviews, 2008 - ACS Publications
… 2 O molecules, in fact, water molecules inside the CNT cannot cross each other and they can
only move as a single file (Figure 4). The structure of water … of how water molecules arrange …
only move as a single file (Figure 4). The structure of water … of how water molecules arrange …
Molecular theories and simulation of ions and polar molecules in water
… accurate, thermodynamic limiting results for the hydration free energy of imidazole with as
few as 16 water molecules included in the simulation. The price to be paid for this accuracy …
few as 16 water molecules included in the simulation. The price to be paid for this accuracy …
… of amino acid side chains: Nonpolar and electrostatic contributions calculated from staged molecular dynamics free energy simulations with explicit water molecules
… energy, we repeated the free energy calculation for benzene in 100 explicit water molecules
for 10 simulations … repulsive, dispersive, and electrostatic free energies are 0.26, 0.09, and …
for 10 simulations … repulsive, dispersive, and electrostatic free energies are 0.26, 0.09, and …
Monte Carlo simulation of physical clusters of water molecules
FF Abraham - The Journal of Chemical Physics, 1974 - pubs.aip.org
… Simulations of water clusters of 8, 27, and 64 molecules at temperatures of 263.2 and 298.0
OK. In Table I, we present the internal energy … trend in the internal energy, that the lower the …
OK. In Table I, we present the internal energy … trend in the internal energy, that the lower the …
A coupled density functional‐molecular mechanics Monte Carlo simulation method: The water molecule in liquid water
I Tuñón, MTC Martins‐Costa, C Millot… - Journal of …, 1996 - Wiley Online Library
… Monte Carlo simulation of a water molecule in liquid water. The … or Simple Point Charge
(SPC) water molecules. The atom-atom … Differences with respect to the classical simulation are …
(SPC) water molecules. The atom-atom … Differences with respect to the classical simulation are …
Revisiting small clusters of water molecules
The geometries and relative energies of small clusters of water molecules, (H 2 O) n with 4
⩽ n ⩽ 8, are reported. For each value of n we have considered the conformations …
⩽ n ⩽ 8, are reported. For each value of n we have considered the conformations …
Ion solvation in polarizable water: molecular dynamics simulations
LX Dang, JE Rice, J Caldwell… - Journal of the American …, 1991 - ACS Publications
… We study the Na+ ion complexes with one to six water molecules and the Cl" ion complexes
with one to four water molecules. In particular, we focus on the results of the Na+(H20)4, Na+…
with one to four water molecules. In particular, we focus on the results of the Na+(H20)4, Na+…
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