Getting the right answers for the right reasons: Toward predictive molecular simulations of water with many-body potential energy functions

F Paesani - Accounts of Chemical Research, 2016 - ACS Publications
energies are defined as the cluster energies minus the energies of the individual water
molecules … This comparison thus directly probes the actual interaction between water molecules

Conserving energy during molecular dynamics simulations of water, proteins, and proteins in water

DB Kitchen, F Hirata, JD Westbrook… - Journal of …, 1990 - Wiley Online Library
… the simulations. The current generation of simulations can handle proteins of molecular weight
… 20,000 solvated by several thousand water molecules. The technology has progressed to …

Water simulation model with explicit three-molecule interactions

R Kumar, JL Skinner - The Journal of Physical Chemistry B, 2008 - ACS Publications
… potential surface for interacting water molecules is simply not … classical simulation model with
explicit two- and three-molecule … Thus the magnitudes of the two- and three-molecule terms …

Molecular simulation of water in carbon nanotubes

A Alexiadis, S Kassinos - Chemical reviews, 2008 - ACS Publications
… 2 O molecules, in fact, water molecules inside the CNT cannot cross each other and they can
only move as a single file (Figure 4). The structure of water … of how water molecules arrange …

Molecular theories and simulation of ions and polar molecules in water

G Hummer, LR Pratt, AE García - The Journal of Physical …, 1998 - ACS Publications
… accurate, thermodynamic limiting results for the hydration free energy of imidazole with as
few as 16 water molecules included in the simulation. The price to be paid for this accuracy …

… of amino acid side chains: Nonpolar and electrostatic contributions calculated from staged molecular dynamics free energy simulations with explicit water molecules

Y Deng, B Roux - The Journal of Physical Chemistry B, 2004 - ACS Publications
energy, we repeated the free energy calculation for benzene in 100 explicit water molecules
for 10 simulations … repulsive, dispersive, and electrostatic free energies are 0.26, 0.09, and …

Monte Carlo simulation of physical clusters of water molecules

FF Abraham - The Journal of Chemical Physics, 1974 - pubs.aip.org
Simulations of water clusters of 8, 27, and 64 molecules at temperatures of 263.2 and 298.0
OK. In Table I, we present the internal energy … trend in the internal energy, that the lower the …

A coupled density functional‐molecular mechanics Monte Carlo simulation method: The water molecule in liquid water

I Tuñón, MTC Martins‐Costa, C Millot… - Journal of …, 1996 - Wiley Online Library
… Monte Carlo simulation of a water molecule in liquid water. The … or Simple Point Charge
(SPC) water molecules. The atom-atom … Differences with respect to the classical simulation are …

Revisiting small clusters of water molecules

KS Kim, M Dupuis, GC Lie, E Clementi - Chemical physics letters, 1986 - Elsevier
The geometries and relative energies of small clusters of water molecules, (H 2 O) n with 4
⩽ n ⩽ 8, are reported. For each value of n we have considered the conformations …

Ion solvation in polarizable water: molecular dynamics simulations

LX Dang, JE Rice, J Caldwell… - Journal of the American …, 1991 - ACS Publications
… We study the Na+ ion complexes with one to six water molecules and the Cl" ion complexes
with one to four water molecules. In particular, we focus on the results of the Na+(H20)4, Na+…