Deep docking: a deep learning platform for augmentation of structure based drug discovery
… introduce Deep Docking (DD), a novel deep learning platform that is suitable for docking …
) deep models trained on docking scores of subsets of a chemical library to approximate the …
) deep models trained on docking scores of subsets of a chemical library to approximate the …
Do deep learning models really outperform traditional approaches in molecular docking?
… have a fair comparison with deep learning models in the blind docking setting, we applied …
docking. For the molecular docking, we use Uni-dock [21], a GPU-accelerated docking tool, for …
docking. For the molecular docking, we use Uni-dock [21], a GPU-accelerated docking tool, for …
Efficient exploration of chemical space with docking and deep learning
… Here, we evaluate our implementation of active learning for molecular docking, using
both the DOCK3.7 and Glide SP programs. All machine-learning models in this work were …
both the DOCK3.7 and Glide SP programs. All machine-learning models in this work were …
[HTML][HTML] Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking
… Hence, various machine learning emulation techniques of docking have been proposed to
perform such tasks without large computing resources. In Supplementary Table 1, we have …
perform such tasks without large computing resources. In Supplementary Table 1, we have …
[HTML][HTML] A deep-learning approach toward rational molecular docking protocol selection
J Jiménez-Luna, A Cuzzolin, G Bolcato, M Sturlese… - Molecules, 2020 - mdpi.com
… a deep-learning-based pipeline for the informed selection of a particular molecular docking
… result in a better pose with a predefined docking algorithm. In conclusion, we believe that we …
… result in a better pose with a predefined docking algorithm. In conclusion, we believe that we …
Deep docking-a deep learning approach for virtual screening of big chemical datasets
… , we herein introduce Deep Docking (D 2 ) - a novel deep learning-based approach which
is suited for docking billions of molecular structures. The developed D 2 -platform utilizes …
is suited for docking billions of molecular structures. The developed D 2 -platform utilizes …
From machine learning to deep learning: Advances in scoring functions for protein–ligand docking
… The docking power refers to the capacity of a SF to … is used to represent the final docking
power. The screening power … than Surflex-Dock, they showed much poorer docking power and …
power. The screening power … than Surflex-Dock, they showed much poorer docking power and …
Rapid identification of potential inhibitors of SARS‐CoV‐2 main protease by deep docking of 1.3 billion compounds
… Recently, our group has developed a novel deep learning platform – Deep Docking (DD)
which provides fast prediction of docking scores of Glide (or any other docking program) and, …
which provides fast prediction of docking scores of Glide (or any other docking program) and, …
Emulating docking results using a deep neural network: a new perspective for virtual screening
S Jastrzebski, M Szymczak, A Pocha… - Journal of Chemical …, 2020 - ACS Publications
… Docking is one of the most important steps in virtual … of learning a deep neural network to
predict the docking output … of magnitude faster than typical docking software, and it returns …
predict the docking output … of magnitude faster than typical docking software, and it returns …
Deep Learning Model of Dock by Dock Process Significantly Accelerate the Process of Docking-based Virtual Screening
W Ma, Q Xie, J Zhang, S Li, Y Xu, X Deng… - arXiv preprint arXiv …, 2021 - arxiv.org
… dockingbased machine learning method called MLDDM (Machince Learning Dockingby-Docking …
, we setup such a machine learning model: MLDDM (Machince Learning Docking-by-…
, we setup such a machine learning model: MLDDM (Machince Learning Docking-by-…
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