[HTML][HTML] Structure-based protein–ligand interaction fingerprints for binding affinity prediction
Binding affinity prediction (BAP) using protein–ligand complex structures is crucial to
computer-aided drug design, but remains a challenging problem. To achieve efficient and …
computer-aided drug design, but remains a challenging problem. To achieve efficient and …
[HTML][HTML] Protein-ligand binding affinity prediction based on profiles of intermolecular contacts
As a key element in structure-based drug design, binding affinity prediction (BAP) for
putative protein-ligand complexes can be efficiently achieved by the incorporation of …
putative protein-ligand complexes can be efficiently achieved by the incorporation of …
Proteo-chemometrics interaction fingerprints of protein–ligand complexes predict binding affinity
Motivation Reliable predictive models of protein–ligand binding affinity are required in many
areas of biomedical research. Accurate prediction based on current descriptors or molecular …
areas of biomedical research. Accurate prediction based on current descriptors or molecular …
SMPLIP-Score: predicting ligand binding affinity from simple and interpretable on-the-fly interaction fingerprint pattern descriptors
In drug discovery, rapid and accurate prediction of protein–ligand binding affinities is a
pivotal task for lead optimization with acceptable on-target potency as well as …
pivotal task for lead optimization with acceptable on-target potency as well as …
Extended connectivity interaction features: improving binding affinity prediction through chemical description
Motivation Machine-learning scoring functions (SFs) have been found to outperform
standard SFs for binding affinity prediction of protein–ligand complexes. A plethora of …
standard SFs for binding affinity prediction of protein–ligand complexes. A plethora of …
Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: a review
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, there has been a …
affinities has the potential to transform drug discovery. In recent years, there has been a …
Iterative Knowledge-Based Scoring Function for Protein–Ligand Interactions by Considering Binding Affinity Information
Scoring functions for protein–ligand interactions play a critical role in structure-based drug
design. Owing to the good balance between general applicability and computational …
design. Owing to the good balance between general applicability and computational …
A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction
Background Current scoring functions are not very successful in protein-ligand binding
affinity prediction albeit their popularity in structure-based drug designs. Here, we propose a …
affinity prediction albeit their popularity in structure-based drug designs. Here, we propose a …
A comparative assessment of predictive accuracies of conventional and machine learning scoring functions for protein-ligand binding affinity prediction
HM Ashtawy, NR Mahapatra - IEEE/ACM transactions on …, 2014 - ieeexplore.ieee.org
Accurately predicting the binding affinities of large diverse sets of protein-ligand complexes
efficiently is a key challenge in computational biomolecular science, with applications in …
efficiently is a key challenge in computational biomolecular science, with applications in …
A comparative assessment of ranking accuracies of conventional and machine-learning-based scoring functions for protein-ligand binding affinity prediction
HM Ashtawy, NR Mahapatra - IEEE/ACM Transactions on …, 2012 - ieeexplore.ieee.org
Accurately predicting the binding affinities of large sets of protein-ligand complexes
efficiently is a key challenge in computational biomolecular science, with applications in …
efficiently is a key challenge in computational biomolecular science, with applications in …