[HTML][HTML] AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening

T Pencheva, D Lagorce, I Pajeva, BO Villoutreix… - BMC …, 2008 - Springer
Background Virtual or in silico ligand screening combined with other computational methods
is one of the most promising methods to search for new lead compounds, thereby greatly …

Automated docking for novel drug discovery

M Bello, M Martínez-Archundia… - Expert opinion on drug …, 2013 - Taylor & Francis
Introduction: The volume of three-dimensional structural information of macromolecules and
the number of computational tools to predict binding modes and affinities of molecular …

Latest trends in structure based drug design with protein targets

A Bagchi - Advances in Protein Chemistry and Structural Biology, 2020 - Elsevier
Abstract Structure based drug designing is an important endeavor in the field of structural
bioinformatics. Previously the entire process was dependent on the wet-lab experiments to …

Computational approaches in the discovery and development of therapeutic and prophylactic agents for viral diseases

A Gaurav, N Agrawal, M Al-Nema… - Current topics in …, 2022 - ingentaconnect.com
Over the last two decades, computational technologies have played a crucial role in antiviral
drug development. Whenever a virus spreads and becomes a threat to global health, it …

Design of aromatic inhibitors of influenza virus neuraminidase

M Luo, GM Air, WJ Brouillette - Journal of Infectious Diseases, 1997 - academic.oup.com
Abstract Structure-based drug design, a terminology used to describe rational drug design
by complementing the structure, spatially and chemically, of the target macromolecule, is …

From computers to bedside: Computational chemistry contributing to FDA approval

C Athanasiou, Z Cournia - Biomolecular Simulations in Structure …, 2018 - books.google.com
The drug design process is unequivocally a time-consuming and expensive endeavor, with
recent estimates classifying it as a $2.6 billion expenditure [1]. From target identification and …

Target-induced formation of neuraminidase inhibitors from in vitro virtual combinatorial libraries

M Hochgürtel, H Kroth, D Piecha… - Proceedings of the …, 2002 - National Acad Sciences
Neuraminidase, a key enzyme responsible for influenza virus propagation, has been used
as a template for selective synthesis of small subsets of its own inhibitors from theoretically …

Molecular docking and structure-based virtual screening

C Liao, ML Peach, R Yao, MC Nicklaus - 2013 - Taylor & Francis
The goal of drug discovery is to find chemical compounds that have a specific biological
effect. One of the main techniques used today in drug discovery is high-throughput …

Scoring functions for virtual screening

F Spyrakis, GE Kellogg, A Amadasi… - Frontiers in Drug …, 2007 - ingentaconnect.com
The docking and scoring paradigm can be considered as the combination of two separate
problems. The first aspect is a geometric, or more broadly an informatics problem: how can …

Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase

LS Cheng, RE Amaro, D Xu, WW Li… - Journal of medicinal …, 2008 - ACS Publications
Avian influenza virus subtype H5N1 is a potential pandemic threat with human-adapted
strains resistant to antiviral drugs. Although virtual screening (VS) against a crystal or …