Fabind: Fast and accurate protein-ligand binding

Q Pei, K Gao, L Wu, J Zhu, Y Xia… - Advances in …, 2024 - proceedings.neurips.cc
Modeling the interaction between proteins and ligands and accurately predicting their
binding structures is a critical yet challenging task in drug discovery. Recent advancements …

CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism

Z Jin, T Wu, T Chen, D Pan, X Wang, J Xie… - …, 2023 - academic.oup.com
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …

Deep learning in drug design: protein-ligand binding affinity prediction

MA Rezaei, Y Li, D Wu, X Li, C Li - IEEE/ACM transactions on …, 2020 - ieeexplore.ieee.org
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …

DeepDTAF: a deep learning method to predict protein–ligand binding affinity

K Wang, R Zhou, Y Li, M Li - Briefings in Bioinformatics, 2021 - academic.oup.com
Biomolecular recognition between ligand and protein plays an essential role in drug
discovery and development. However, it is extremely time and resource consuming to …

[HTML][HTML] CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training

H Cai, C Shen, T Jian, X Zhang, T Chen, X Han… - Chemical …, 2024 - pubs.rsc.org
The expertise accumulated in deep neural network-based structure prediction has been
widely transferred to the field of protein–ligand binding pose prediction, thus leading to the …

DeepAtom: A framework for protein-ligand binding affinity prediction

Y Li, MA Rezaei, C Li, X Li - 2019 IEEE International …, 2019 - ieeexplore.ieee.org
The cornerstone of computational drug design is the calculation of binding affinity between
two biological counterparts especially a chemical compound, ie a ligand, and a protein …

[HTML][HTML] Improving the generalizability of protein-ligand binding predictions with AI-Bind

A Chatterjee, R Walters, Z Shafi, OS Ahmed… - Nature …, 2023 - nature.com
Identifying novel drug-target interactions is a critical and rate-limiting step in drug discovery.
While deep learning models have been proposed to accelerate the identification process …

E3bind: An end-to-end equivariant network for protein-ligand docking

Y Zhang, H Cai, C Shi, B Zhong, J Tang - arXiv preprint arXiv:2210.06069, 2022 - arxiv.org
In silico prediction of the ligand binding pose to a given protein target is a crucial but
challenging task in drug discovery. This work focuses on blind flexible selfdocking, where …

DEELIG: A deep learning approach to predict protein-ligand binding affinity

A Ahmed, B Mam… - Bioinformatics and biology …, 2021 - journals.sagepub.com
Protein-ligand binding prediction has extensive biological significance. Binding affinity helps
in understanding the degree of protein-ligand interactions and is a useful measure in drug …

MGPLI: exploring multigranular representations for protein–ligand interaction prediction

J Wang, J Hu, H Sun, MD Xu, Y Yu, Y Liu… - …, 2022 - academic.oup.com
Motivation The capability to predict the potential drug binding affinity against a protein target
has always been a fundamental challenge in silico drug discovery. The traditional …