[HTML][HTML] Coarse-graining involving virtual sites: Centers of symmetry coarse-graining
Coarse-grained (CG) models allow efficient molecular simulation by reducing the degrees of
freedom in the system. To recapitulate important physical properties, including many-body …
freedom in the system. To recapitulate important physical properties, including many-body …
Bottom-up coarse-graining: Principles and perspectives
Large-scale computational molecular models provide scientists a means to investigate the
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
effect of microscopic details on emergent mesoscopic behavior. Elucidating the relationship …
[HTML][HTML] The impact of resolution upon entropy and information in coarse-grained models
By eliminating unnecessary degrees of freedom, coarse-grained (CG) models tremendously
facilitate numerical calculations and theoretical analyses of complex phenomena. However …
facilitate numerical calculations and theoretical analyses of complex phenomena. However …
Coarse-graining entropy, forces, and structures
JF Rudzinski, WG Noid - The Journal of chemical physics, 2011 - pubs.aip.org
Coarse-grained (CG) models enable highly efficient simulations of complex processes that
cannot be effectively studied with more detailed models. CG models are often parameterized …
cannot be effectively studied with more detailed models. CG models are often parameterized …
Temperature and phase transferable bottom-up coarse-grained models
Despite the high fidelity of bottom-up coarse-grained (CG) approaches to recapitulate the
structural correlations in atomistic simulations, the general use of bottom-up CG methods is …
structural correlations in atomistic simulations, the general use of bottom-up CG methods is …
Understanding missing entropy in coarse-grained systems: Addressing issues of representability and transferability
Coarse-grained (CG) models facilitate efficient simulation of complex systems by integrating
out the atomic, or fine-grained (FG), degrees of freedom. Systematically derived CG models …
out the atomic, or fine-grained (FG), degrees of freedom. Systematically derived CG models …
Enhancing pressure consistency and transferability of structure-based coarse-graining
J Tang, T Kobayashi, H Zhang, K Fukuzawa… - Physical Chemistry …, 2023 - pubs.rsc.org
Coarse-graining, which models molecules with coarse-grained (CG) beads, allows
molecular dynamics simulations to be applied to systems with large length and time scales …
molecular dynamics simulations to be applied to systems with large length and time scales …
[HTML][HTML] A microcanonical approach to temperature-transferable coarse-grained models using the relative entropy
Bottom-up coarse-graining methods provide systematic tools for creating simplified models
of molecular systems. However, coarse-grained (CG) models produced with such methods …
of molecular systems. However, coarse-grained (CG) models produced with such methods …
Statistical mechanical design principles for coarse-grained interactions across different conformational free energy surfaces
Systematic bottom-up coarse-graining (CG) of molecular systems provides a means to
explore different coupled length and time scales while treating the molecular-scale physics …
explore different coupled length and time scales while treating the molecular-scale physics …
Analysis of mapping atomic models to coarse-grained resolution
KM Kidder, WG Noid - The Journal of Chemical Physics, 2024 - pubs.aip.org
Low-resolution coarse-grained (CG) models provide significant computational and
conceptual advantages for simulating soft materials. However, the properties of CG models …
conceptual advantages for simulating soft materials. However, the properties of CG models …