A knowledge-based halogen bonding scoring function for predicting protein-ligand interactions
Y Liu, Z Xu, Z Yang, K Chen, W Zhu - Journal of molecular modeling, 2013 - Springer
Halogen bonding, a non-covalent interaction between the halogen σ-hole and Lewis bases,
could not be properly characterized by majority of current scoring functions. In this study, a …
could not be properly characterized by majority of current scoring functions. In this study, a …
A quantum mechanics-based halogen bonding scoring function for protein-ligand interactions
A quantum mechanics-based scoring function for halogen bonding interaction, namely
XBScore QM, is developed based on 18,135 sets of geometrical and energetical parameters …
XBScore QM, is developed based on 18,135 sets of geometrical and energetical parameters …
AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock Vina
Background Halogen bonding has recently come to play as a target for lead optimization in
rational drug design. However, most docking program don't account for halogen bonding in …
rational drug design. However, most docking program don't account for halogen bonding in …
The many faces of halogen bonding: A review of theoretical models and methods
Halogen bonds, the formally noncovalent interactions where the halogen acts as a Lewis
acid, have brought several controversies to the theoretical world regarding its nature and …
acid, have brought several controversies to the theoretical world regarding its nature and …
The underestimated halogen bonds forming with protein side chains in drug discovery and design
Q Zhang, Z Xu, W Zhu - Journal of Chemical Information and …, 2017 - ACS Publications
Halogen bonds (XBs) have been attracting increasing attention in biological systems,
especially in drug discovery and design, for their advantages of both improving drug–target …
especially in drug discovery and design, for their advantages of both improving drug–target …
Scaffold effects on halogen bonding strength
A Lange, J Heidrich, MO Zimmermann… - Journal of Chemical …, 2019 - ACS Publications
Halogen bonds have become increasingly popular interactions in molecular design and
drug discovery. One of the key features is the strong dependence of the size and magnitude …
drug discovery. One of the key features is the strong dependence of the size and magnitude …
Halogen bonding in halocarbon-protein complexes and computational tools for rational drug design
Introduction: Halogens have a prominent role in drug design. Often used as a mean to
improve ADME properties, they are also becoming a tool in protein–ligand recognition given …
improve ADME properties, they are also becoming a tool in protein–ligand recognition given …
Strength and character of halogen bonds in protein–ligand complexes
KE Riley, P Hobza - Crystal growth & design, 2011 - ACS Publications
In this study we investigate the strength and character of eight halogen bonding interactions
from six protein–ligand complexes. The halogen bonding complexes investigated here were …
from six protein–ligand complexes. The halogen bonding complexes investigated here were …
Molecular docking in halogen bonding
A Suárez-Castro, M Valle-Sánchez… - Molecular …, 2018 - books.google.com
Molecular modeling applies several computational chemistry tools as molecular docking;
this latter has been useful in medicinal chemistry for prediction of interactions between small …
this latter has been useful in medicinal chemistry for prediction of interactions between small …
The evaluation of QM/MM-driven molecular docking combined with MM/GBSA calculations as a halogen-bond scoring strategy
R Kurczab - Acta Crystallographica Section B: Structural Science …, 2017 - journals.iucr.org
The combination of quantum mechanics/molecular mechanics-driven (QM/MM) molecular
docking with binding free-energy calculations was successfully used to reproduce the X-ray …
docking with binding free-energy calculations was successfully used to reproduce the X-ray …