How accurately can one predict drug binding modes using AlphaFold models?
Computational prediction of protein structure has been pursued intensely for decades,
motivated largely by the goal of using structural models for drug discovery. Recently …
motivated largely by the goal of using structural models for drug discovery. Recently …
AI-based protein structure prediction in drug discovery: impacts and challenges
M Schauperl, RA Denny - Journal of Chemical Information and …, 2022 - ACS Publications
Proteins are the molecular machinery of the human body, and their malfunctioning is often
responsible for diseases, making them crucial targets for drug discovery. The three …
responsible for diseases, making them crucial targets for drug discovery. The three …
AlphaFold2 protein structure prediction: Implications for drug discovery
N Borkakoti, JM Thornton - Current opinion in structural biology, 2023 - Elsevier
The drug discovery process involves designing compounds to selectively interact with their
targets. The majority of therapeutic targets for low molecular weight (small molecule) drugs …
targets. The majority of therapeutic targets for low molecular weight (small molecule) drugs …
[PDF][PDF] How good are AlphaFold models for docking-based virtual screening?
V Scardino, JI Di Filippo, CN Cavasotto - Iscience, 2023 - cell.com
A crucial component in structure-based drug discovery is the availability of high-quality three-
dimensional structures of the protein target. Whenever experimental structures were not …
dimensional structures of the protein target. Whenever experimental structures were not …
Evaluation of AlphaFold2 structures as docking targets
AlphaFold2 is a promising new tool for researchers to predict protein structures and
generate high‐quality models, with low backbone and global root‐mean‐square deviation …
generate high‐quality models, with low backbone and global root‐mean‐square deviation …
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …
revolutionized structural biology. The accuracies of these predictions vary, however, and …
A structural biology community assessment of AlphaFold2 applications
Most proteins fold into 3D structures that determine how they function and orchestrate the
biological processes of the cell. Recent developments in computational methods for protein …
biological processes of the cell. Recent developments in computational methods for protein …
Modelling three-dimensional protein structures for applications in drug design
T Schmidt, A Bergner, T Schwede - Drug discovery today, 2014 - Elsevier
Highlights•The majority of proteins encoded in a genome are accessible by structure
modelling.•Modelling can provide accurate target predictions for structure-based drug …
modelling.•Modelling can provide accurate target predictions for structure-based drug …
Biasing AlphaFold2 to predict GPCRs and kinases with user-defined functional or structural properties
Determining the three-dimensional structure of proteins in their native functional states has
been a longstanding challenge in structural biology. While integrative structural biology has …
been a longstanding challenge in structural biology. While integrative structural biology has …
Are deep learning structural models sufficiently accurate for virtual screening? application of docking algorithms to AlphaFold2 predicted structures
AM Díaz-Rovira, H Martín, T Beuming… - Journal of Chemical …, 2023 - ACS Publications
Machine learning-based protein structure prediction algorithms, such as RosettaFold and
AlphaFold2, have greatly impacted the structural biology field, arousing a fair amount of …
AlphaFold2, have greatly impacted the structural biology field, arousing a fair amount of …