Use of connectivity mapping to support read across: A deeper dive using data from 186 chemicals, 19 cell lines and 2 case studies
KN De Abrew, YK Shan, X Wang, JM Krailler… - Toxicology, 2019 - Elsevier
We previously demonstrated that the Connectivity Map (CMap)(Lamb et al., 2006) concept
can be successfully applied to a predictive toxicology paradigm to generate meaningful MoA …
can be successfully applied to a predictive toxicology paradigm to generate meaningful MoA …
Navigating transcriptomic connectivity mapping workflows to link chemicals with bioactivities
Screening new compounds for potential bioactivities against cellular targets is vital for drug
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …
Grouping 34 chemicals based on mode of action using connectivity mapping
KN De Abrew, RM Kainkaryam, YK Shan… - Toxicological …, 2016 - academic.oup.com
Connectivity mapping is a method used in the pharmaceutical industry to find connections
between small molecules, disease states, and genes. The concept can be applied to a …
between small molecules, disease states, and genes. The concept can be applied to a …
[HTML][HTML] Using read-across to build physiologically-based kinetic models: Part 1. Development of a KNIME workflow to assist analogue selection for PBK modelling
CV Thompson, SD Webb, JA Leedale… - Computational …, 2024 - Elsevier
Read-across refers to the process by which information from one (source) chemical is used
to infer information about another similar (target) chemical. This method can be used to fill …
to infer information about another similar (target) chemical. This method can be used to fill …
[HTML][HTML] Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles
Background A very large and rapidly growing collection of transcriptomic profiles in public
repositories is potentially of great value to developing data-driven bioinformatics …
repositories is potentially of great value to developing data-driven bioinformatics …
Key read across framework components and biology based improvements
At the 2019 annual meeting of the European Environmental Mutagen and Genomics Society
a workshop session related to the use of read across concepts in toxicology was held. The …
a workshop session related to the use of read across concepts in toxicology was held. The …
Automated integration of structural, biological and metabolic similarities to improve read-across
D Gadaleta, AG Bakhtyari, GJ Lavado… - ALTEX-Alternatives to …, 2020 - altex.org
Read-across (RAX) is a popular data gap-filling technique that uses category and analogue
approaches to predict toxicological endpoints for a target. Despite its increasing relevance …
approaches to predict toxicological endpoints for a target. Despite its increasing relevance …
[HTML][HTML] t4 report: Supporting read-across using biological data
Read-across, ie filling toxicological data gaps by relating to similar chemicals, for which test
data are available, is usually done based on chemical similarity. Besides structure and …
data are available, is usually done based on chemical similarity. Besides structure and …
Making big sense from big data in toxicology by read-across
T Hartung - ALTEX-Alternatives to animal experimentation, 2016 - altex.org
Modern information technologies have made big data available in safety sciences, ie,
extremely large data sets that may be analyzed only computationally to reveal patterns …
extremely large data sets that may be analyzed only computationally to reveal patterns …
[HTML][HTML] Prospects and challenges of multi-omics data integration in toxicology
S Canzler, J Schor, W Busch, K Schubert… - Archives of …, 2020 - Springer
Exposure of cells or organisms to chemicals can trigger a series of effects at the regulatory
pathway level, which involve changes of levels, interactions, and feedback loops of …
pathway level, which involve changes of levels, interactions, and feedback loops of …