The NCBI: Publicly available tools and resources on the web

JP Jenuth - Bioinformatics methods and protocols, 1999 - Springer
Abstract The National Center for Biotechnology Information (NCBI) was established in
November 1988, at the National Library of Medicine (NLM) in the United States. The NLM …

The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources

GR Cochrane, MY Galperin - Nucleic acids research, 2010 - academic.oup.com
The current issue of Nucleic Acids Research includes descriptions of 58 new and 73
updated data resources. The accompanying online Database Collection, available at …

Diffusion pattern of the use of genomic databases and analysis of biological sequences from 1970–2003: Bibliographic record analysis of 12 journals

A Shachak - Journal of the American Society for Information …, 2006 - Wiley Online Library
In recent years there has been an explosion of biological data stored in large central
databases, tools to handle the data, and educational programs to train scientists in using …

PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature

D Yoo, I Xu, TZ Berardini, S Yon Rhee… - Current Protocols in …, 2006 - Wiley Online Library
For most systems in biology, a large body of literature exists that describes the complexity of
the system based on experimental results. Manual review of this literature to extract targeted …

NCBI: Integrated data for molecular biology research

K Sirotkin - Bioinformatics: Databases and Systems, 1999 - Springer
Summary Since 1992 the National Center for Biotechnology Information (NCBI) has
provided integrated access to all public genetic sequence information and its associated …

PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids

M García-Remesal, A Cuevas, D Pérez-Rey… - …, 2010 - academic.oup.com
PubDNA Finder is an online repository that we have created to link PubMed Central
manuscripts to the sequences of nucleic acids appearing in them. It extends the search …

WWW Entrez: A Hypertext Retrieval Tool for Molecular Biology.

JA Epstein, JA Kans, GD Schuler - 1994 - ERIC
This article describes the World Wide Web (WWW) Entrez server which is based upon the
National Center for Biotechnology Information's (NCBI) Entrez retrieval database and …

Databases, data tombs and dust in the wind

JD Wren, A Bateman - Bioinformatics, 2008 - academic.oup.com
Contact: jdwren@ gmail. com As biomedical data accumulates, the need to store, share and
organize it grows. Consequently, the number of Internet-accessible databases has been …

KEGG API: A web service using SOAP/WSDL to access the KEGG system

S Kawashima, T Katayama, Y Sato… - Genome informatics, 2003 - jstage.jst.go.jp
We have been making the KEGG system available at GenomeNet [2]. KEGG is a suite of
databases including GENES, SSDB, PATHWAY, LIGAND, LinkDB, etc. for genome research …

The changing face of scientific discourse: Analysis of genomic and proteomic database usage and acceptance

C Brown - Journal of the American Society for Information …, 2003 - Wiley Online Library
The explosion of the field of molecular biology is paralleled by the growth in usage and
acceptance of Web‐based genomic and proteomic databases (GPD) such as GenBank and …