Biomolecular electrostatics and solvation: a computational perspective

P Ren, J Chun, DG Thomas, MJ Schnieders… - Quarterly reviews of …, 2012 - cambridge.org
An understanding of molecular interactions is essential for insight into biological systems at
the molecular scale. Among the various components of molecular interactions, electrostatics …

Electrostatics calculations: latest methodological advances

P Koehl - Current opinion in structural biology, 2006 - Elsevier
Electrostatics plays a major role in the stabilization and function of biomolecules; as such, it
remains a major focus of theoretical and computational studies of macromolecules …

Theory of electrostatic interactions in macromolecules

MK Gilson - Current opinion in structural biology, 1995 - Elsevier
In the past year, substantial progress has been made in the modeling of electrostatic
interactions in biomolecules. This review highlights advances in the following areas: first, the …

Computational methods for biomolecular electrostatics

F Dong, B Olsen, NA Baker - Methods in cell biology, 2008 - Elsevier
An understanding of intermolecular interactions is essential for insight into how cells
develop, operate, communicate, and control their activities. Such interactions include …

Macromolecular electrostatics: continuum models and their growing pains

T Simonson - Current Opinion in Structural Biology, 2001 - Elsevier
Theoretical understanding of macromolecular electrostatics has advanced substantially over
the past year. Continuum models have given promising results for calculating protein–ligand …

Solvation forces on biomolecular structures: a comparison of explicit solvent and Poisson–Boltzmann models

J Wagoner, NA Baker - Journal of computational chemistry, 2004 - Wiley Online Library
Continuum electrostatics methods have become increasingly popular due to their ability to
provide approximate descriptions of solvation energies and forces without expensive …

The inducible multipole solvation model: A new model for solvation effects on solute electrostatics

ME Davis - The Journal of chemical physics, 1994 - pubs.aip.org
A new approach to modeling the electrostatics of molecules in solution is presented, which
is comparable in accuracy to finite‐difference continuum models, yet is comparable in speed …

Modeling electrostatic effects in proteins

A Warshel, PK Sharma, M Kato, WW Parson - Biochimica et Biophysica …, 2006 - Elsevier
Electrostatic energies provide what is perhaps the most effective tool for structure–function
correlation of biological molecules. This review considers the current state of simulations of …

[PDF][PDF] Macroscopic electrostatic models for protonation states in proteins

D Bashford - Front Biosci, 2004 - article.imrpress.com
Introduction 3. Macroscopic Electrostatics 3.1. Outer Boundary Conditions 3.2. Linear
Response and Green Functions 4. Electrolytes and the Linearized Poisson–Boltzmann …

Molecular electrostatic potentials and noncovalent interactions

JS Murray, P Politzer - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
σ‐Holes and π‐holes are two types of regions of lower electronic density that are frequently
found in molecules. There are often positive electrostatic potentials associated with them …