KECSA-movable type implicit solvation model (KMTISM)
Computation of the solvation free energy for chemical and biological processes has long
been of significant interest. The key challenges to effective solvation modeling center on the …
been of significant interest. The key challenges to effective solvation modeling center on the …
[HTML][HTML] Improved prediction of solvation free energies by machine-learning polarizable continuum solvation model
A Alibakhshi, B Hartke - Nature Communications, 2021 - nature.com
Theoretical estimation of solvation free energy by continuum solvation models, as a
standard approach in computational chemistry, is extensively applied by a broad range of …
standard approach in computational chemistry, is extensively applied by a broad range of …
Computations of absolute solvation free energies of small molecules using explicit and implicit solvent model
D Shivakumar, Y Deng, B Roux - Journal of Chemical Theory and …, 2009 - ACS Publications
Accurate determination of absolute solvation free energy plays a critical role in numerous
areas of biomolecular modeling and drug discovery. A quantitative representation of ligand …
areas of biomolecular modeling and drug discovery. A quantitative representation of ligand …
Performance of SM6, SM8, and SMD on the SAMPL1 test set for the prediction of small-molecule solvation free energies
AV Marenich, CJ Cramer… - The Journal of Physical …, 2009 - ACS Publications
The SM6, SM8, and SMD quantum mechanical aqueous continuum solvation models are
applied to predict free energies of aqueous solvation for 61 molecules in the SAMPL1 test …
applied to predict free energies of aqueous solvation for 61 molecules in the SAMPL1 test …
Breaking the polar‐nonpolar division in solvation free energy prediction
Implicit solvent models divide solvation free energies into polar and nonpolar additive
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …
Improving Performance of the SMD Solvation Model: Bondi Radii Improve Predicted Aqueous Solvation Free Energies of Ions and pKa Values of Thiols
Calculation of the solvation free energy of ionic molecules is the principal source of errors in
the quantum chemical evaluation of p K a values using implicit polarizable continuum …
the quantum chemical evaluation of p K a values using implicit polarizable continuum …
Improving the accuracy of PCM-UAHF and PCM-UAKS calculations using optimized electrostatic scaling factors
The optimal electrostatic scaling factor (ESF) for the calculation of solvation Gibbs free
energies with the polarizable continuum model (PCM) was determined via extensive …
energies with the polarizable continuum model (PCM) was determined via extensive …
A generalized G-SFED continuum solvation free energy calculation model
An empirical continuum solvation model, solvation free energy density (SFED), has been
developed to calculate solvation free energies of a molecule in the most frequently used …
developed to calculate solvation free energies of a molecule in the most frequently used …
New universal solvation model and comparison of the accuracy of the SM5. 42R, SM5. 43R, C-PCM, D-PCM, and IEF-PCM continuum solvation models for aqueous …
JD Thompson, CJ Cramer… - The Journal of Physical …, 2004 - ACS Publications
We present a new continuum solvation model, called Solvation Model 5.43 R (SM5. 43R).
The model is based on the generalized Born approximation for electrostatics augmented by …
The model is based on the generalized Born approximation for electrostatics augmented by …
[HTML][HTML] Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies
In this work, a systematic protocol is proposed to automatically parametrize the non-polar
part of implicit solvent models with polar and non-polar components. The proposed protocol …
part of implicit solvent models with polar and non-polar components. The proposed protocol …