KECSA-movable type implicit solvation model (KMTISM)

Z Zheng, T Wang, P Li, KM Merz Jr - Journal of chemical theory …, 2015 - ACS Publications
Computation of the solvation free energy for chemical and biological processes has long
been of significant interest. The key challenges to effective solvation modeling center on the …

[HTML][HTML] Improved prediction of solvation free energies by machine-learning polarizable continuum solvation model

A Alibakhshi, B Hartke - Nature Communications, 2021 - nature.com
Theoretical estimation of solvation free energy by continuum solvation models, as a
standard approach in computational chemistry, is extensively applied by a broad range of …

Computations of absolute solvation free energies of small molecules using explicit and implicit solvent model

D Shivakumar, Y Deng, B Roux - Journal of Chemical Theory and …, 2009 - ACS Publications
Accurate determination of absolute solvation free energy plays a critical role in numerous
areas of biomolecular modeling and drug discovery. A quantitative representation of ligand …

Performance of SM6, SM8, and SMD on the SAMPL1 test set for the prediction of small-molecule solvation free energies

AV Marenich, CJ Cramer… - The Journal of Physical …, 2009 - ACS Publications
The SM6, SM8, and SMD quantum mechanical aqueous continuum solvation models are
applied to predict free energies of aqueous solvation for 61 molecules in the SAMPL1 test …

Breaking the polar‐nonpolar division in solvation free energy prediction

B Wang, C Wang, K Wu, GW Wei - Journal of computational …, 2018 - Wiley Online Library
Implicit solvent models divide solvation free energies into polar and nonpolar additive
contributions, whereas polar and nonpolar interactions are inseparable and nonadditive. We …

Improving Performance of the SMD Solvation Model: Bondi Radii Improve Predicted Aqueous Solvation Free Energies of Ions and pKa Values of Thiols

S Mirzaei, MV Ivanov… - The Journal of Physical …, 2019 - ACS Publications
Calculation of the solvation free energy of ionic molecules is the principal source of errors in
the quantum chemical evaluation of p K a values using implicit polarizable continuum …

Improving the accuracy of PCM-UAHF and PCM-UAKS calculations using optimized electrostatic scaling factors

L Xu, ML Coote - Journal of chemical theory and computation, 2019 - ACS Publications
The optimal electrostatic scaling factor (ESF) for the calculation of solvation Gibbs free
energies with the polarizable continuum model (PCM) was determined via extensive …

A generalized G-SFED continuum solvation free energy calculation model

S Lee, KH Cho, YM Kang… - Proceedings of the …, 2013 - National Acad Sciences
An empirical continuum solvation model, solvation free energy density (SFED), has been
developed to calculate solvation free energies of a molecule in the most frequently used …

New universal solvation model and comparison of the accuracy of the SM5. 42R, SM5. 43R, C-PCM, D-PCM, and IEF-PCM continuum solvation models for aqueous …

JD Thompson, CJ Cramer… - The Journal of Physical …, 2004 - ACS Publications
We present a new continuum solvation model, called Solvation Model 5.43 R (SM5. 43R).
The model is based on the generalized Born approximation for electrostatics augmented by …

[HTML][HTML] Automatic parametrization of non-polar implicit solvent models for the blind prediction of solvation free energies

B Wang, Z Zhao, GW Wei - The Journal of chemical physics, 2016 - pubs.aip.org
In this work, a systematic protocol is proposed to automatically parametrize the non-polar
part of implicit solvent models with polar and non-polar components. The proposed protocol …