Computational solvation dynamics: Implementation, application, and validation
C Schröder, E Heid - Annual Reports in Computational Chemistry, 2020 - Elsevier
The time-dependent Stokes shift is frequently used to study solvation dynamics
experimentally and on the computer. Its ability to provide locally resolved information on …
experimentally and on the computer. Its ability to provide locally resolved information on …
Solvation dynamics: improved reproduction of the time-dependent Stokes shift with polarizable empirical force field chromophore models
E Heid, S Schmode, P Chatterjee… - Physical Chemistry …, 2019 - pubs.rsc.org
The inclusion of explicit polarization in molecular dynamics simulation has gained
increasing interest during the last several years. An understudied area is the role of …
increasing interest during the last several years. An understudied area is the role of …
Explicit Projection of Stokes Shifts onto Solvent Motion in an Aqueous Liquid and Linear Response Theory
K Hu, X Wang, T Li - The Journal of Physical Chemistry B, 2022 - ACS Publications
We investigate the molecular origin of the fluorescence Stokes shift in an aqueous liquid. By
examining the speed of energy change, the solvation response function is explicitly …
examining the speed of energy change, the solvation response function is explicitly …
Hidden breakdown of linear response: Projections of molecular motions in nonequilibrium simulations of solvation dynamics
MJ Bedard-Hearn, RE Larsen… - The Journal of Physical …, 2003 - ACS Publications
The linear response (LR) approximation forms the cornerstone of nonequilibrium statistical
mechanics and has found special utility in studies of solvation dynamics, in which LR implies …
mechanics and has found special utility in studies of solvation dynamics, in which LR implies …
Polarizability in ionic liquid simulations causes hidden breakdown of linear response theory
E Heid, C Schröder - Physical Chemistry Chemical Physics, 2019 - pubs.rsc.org
The validity of linear response theory (LRT) in computer simulations of solvation dynamics,
ie the time-dependent Stokes shift, has been debated widely during the last decades. Since …
ie the time-dependent Stokes shift, has been debated widely during the last decades. Since …
Probing polar solvation dynamics in proteins: a molecular dynamics simulation analysis
AA Golosov, M Karplus - The Journal of Physical Chemistry B, 2007 - ACS Publications
Measurements of time-resolved Stokes shifts on picosecond to nanosecond time scales
have been used to probe the polar solvation dynamics of biological systems. Since it is …
have been used to probe the polar solvation dynamics of biological systems. Since it is …
Mechanistic studies of solvation dynamics in liquids
BM Ladanyi - Theoretical Methods in Condensed Phase Chemistry, 2000 - Springer
This chapter deals with several aspects of theory and computer simulation of solvation
dynamics (SD), the solvent response to a change in solutesolvent interactions brought about …
dynamics (SD), the solvent response to a change in solutesolvent interactions brought about …
On the multiple time scales in solvation dynamics: A mode-coupling theory approach
SA Egorov, RA Denny, DR Reichman - The Journal of chemical …, 2002 - pubs.aip.org
A microscopic statistical mechanical theory of solvation dynamics is presented. The theory is
capable of reproducing the characteristic multiphasic behavior of the solvation correlation …
capable of reproducing the characteristic multiphasic behavior of the solvation correlation …
Molecular aspects of nonequilibrium solvation: a simulation of dipole relaxation
OA Karim, ADJ Haymet, MJ Banet… - The Journal of Physical …, 1988 - ACS Publications
The molecular dynamics method has been used tosimulate solvent relaxation around a
dissolved solute molecule after a sudden change in its permanent dipole moment. The …
dissolved solute molecule after a sudden change in its permanent dipole moment. The …
Solute dependence of polar solvation dynamics studied by RISM/mode-coupling theory
K Nishiyama, T Yamaguchi, F Hirata… - Journal of solution …, 2004 - Springer
We apply the combination of the reference interaction-site model (RISM) theory and mode-
coupling theory (MCT) for the description of solvation dynamics in acetonitrile. The RISM …
coupling theory (MCT) for the description of solvation dynamics in acetonitrile. The RISM …
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