Efficient implicit solvation method for full potential DFT

M Sinstein, C Scheurer, S Matera, V Blum… - Journal of Chemical …, 2017 - ACS Publications
With the advent of efficient electronic structure methods, effective continuum solvation
methods have emerged as a way to, at least partially, include solvent effects into simulations …

Calculated hydration free energies of small organic molecules using a nonlinear dielectric continuum model

L Sandberg, R Casemyr, O Edholm - The Journal of Physical …, 2002 - ACS Publications
Prediction of solvation free energies is an important subject in fundamental natural science
but also important to the pharmaceutical and food industry. A popular modeling approach is …

Solvation model based on weighted solvent accessible surface area

J Wang, W Wang, S Huo, M Lee… - The Journal of Physical …, 2001 - ACS Publications
We have developed a fast procedure to predict solvation free energies for both organic and
biological molecules. This solvation model is based on weighted solvent accessible surface …

Solvation thermodynamics of polar molecules in aqueous solution by the XRISM method

PH Lee, GM Maggiora - The Journal of Physical Chemistry, 1993 - ACS Publications
The aqueous solvation free energies and the average solute-solvent interaction energies of
a diverse set of organic molecules were calculated by the XRISM (extended reference …

Prediction of solvation free energies of small organic molecules: additive-constitutive models based on molecular fingerprints and atomic constants

VN Viswanadhan, AK Ghose, UC Singh… - Journal of chemical …, 1999 - ACS Publications
Solvation free energy is an important molecular characteristic useful in drug discovery
because it represents the desolvation cost of a ligand binding to a receptor. Most of the …

Calculation of the free energy of solvation for neutral analogs of amino acid side chains

A Villa, AE Mark - Journal of computational chemistry, 2002 - Wiley Online Library
The ability of the GROMOS96 force field to reproduce partition constants between water and
two less polar solvents (cyclohexane and chloroform) for analogs of 18 of the 20 naturally …

Assessing the accuracy of inhomogeneous fluid solvation theory in predicting hydration free energies of simple solutes

DJ Huggins, MC Payne - The Journal of Physical Chemistry B, 2013 - ACS Publications
Accurate prediction of hydration free energies is a key objective of any free energy method
that is applied to modeling and understanding interactions in the aqueous phase …

Solvation free energies estimated from macroscopic continuum theory: an accuracy assessment

T Simonson, AT Bruenger - The Journal of Physical Chemistry, 1994 - ACS Publications
The solvation thermodynamics of a set of small organic molecules is studied using a simple
continuum model. Transfer from vapor or cyclohexane to water is decomposed into three …

Grid-based surface generalized Born model for calculation of electrostatic binding free energies

N Forouzesh, S Izadi, AV Onufriev - Journal of chemical …, 2017 - ACS Publications
Fast and accurate calculation of solvation free energies is central to many applications, such
as rational drug design. In this study, we present a grid-based molecular surface …

Determination of the absolute solvation free energy and enthalpy of the proton in solutions

A Malloum, JJ Fifen, J Conradie - Journal of Molecular Liquids, 2021 - Elsevier
The absolute solvation energies (free energy and enthalpy) of the proton in solution is of
great importance for biological and chemical processes in that solution. The absolute …