INAQS, a generic interface for nonadiabatic QM/MM dynamics: design, implementation, and validation for GROMACS/Q-CHEM simulations

DV Cofer-Shabica, MFSJ Menger, Q Ou… - Journal of Chemical …, 2022 - ACS Publications
The accurate description of large molecular systems in complex environments remains an
ongoing challenge for the field of computational chemistry. This problem is even more …

QM/MM nonadiabatic dynamics: the SHARC/COBRAMM approach

D Avagliano, M Bonfanti, M Garavelli… - Journal of Chemical …, 2021 - ACS Publications
We present the SHARC/COBRAMM approach to enable easy and efficient excited-state
dynamics simulations at different levels of electronic structure theory in the presence of …

Nature of Hops, Coordinates, and Detailed Balance for Nonadiabatic Simulations in the Condensed Phase

MFSJ Menger, Q Ou, Y Shao, S Faraji… - The Journal of …, 2023 - ACS Publications
Photoinduced processes play a crucial role in a multitude of important molecular
phenomena. Accurately modeling these processes in an environment other than a vacuum …

Recent advances and perspectives on nonadiabatic mixed quantum–classical dynamics

R Crespo-Otero, M Barbatti - Chemical reviews, 2018 - ACS Publications
Nonadiabatic mixed quantum–classical (NA-MQC) dynamics methods form a class of
computational theoretical approaches in quantum chemistry tailored to investigate the time …

PyUNIxMD: A Python‐based excited state molecular dynamics package

IS Lee, JK Ha, D Han, TI Kim… - Journal of …, 2021 - Wiley Online Library
Theoretical/computational description of excited state molecular dynamics is nowadays a
crucial tool for understanding light‐matter interactions in many materials. Here we present …

Predicting molecular photochemistry using machine-learning-enhanced quantum dynamics simulations

GW Richings, S Habershon - Accounts of Chemical Research, 2022 - ACS Publications
Conspectus The processes which occur after molecules absorb light underpin an enormous
range of fundamental technologies and applications, including photocatalysis to enable new …

COBRAMM 2.0—A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations

O Weingart, A Nenov, P Altoè, I Rivalta… - Journal of Molecular …, 2018 - Springer
We present a new version of the simulation software COBRAMM, a program package
interfacing widely known commercial and academic software for molecular modeling. It …

Ab initio nonadiabatic dynamics with coupled trajectories: A rigorous approach to quantum (de) coherence

SK Min, F Agostini, I Tavernelli… - The journal of physical …, 2017 - ACS Publications
We report the first nonadiabatic molecular dynamics study based on the exact factorization
of the electron–nuclear wave function. Our approach (a coupled-trajectory mixed quantum …

An overview of nonadiabatic dynamics simulations methods, with focus on the direct approach versus the fitting of potential energy surfaces

M Persico, G Granucci - Theoretical Chemistry Accounts, 2014 - Springer
We review state-of-the-art nonadiabatic molecular dynamics methods, with focus on the
comparison of two general strategies: the “direct” one, in which the potential energy surfaces …

Accelerating Ab Initio Quantum Mechanical and Molecular Mechanical (QM/MM) Molecular Dynamics Simulations with Multiple Time Step Integration and a …

X Pan, R Van, E Epifanovsky, J Liu, J Pu… - The Journal of …, 2022 - ACS Publications
Molecular dynamics (MD) simulations employing ab initio quantum mechanical and
molecular mechanical (ai-QM/MM) potentials are considered to be the state of the art, but the …