[HTML][HTML] Refinement and rescoring of virtual screening results

G Rastelli, L Pinzi - Frontiers in chemistry, 2019 - frontiersin.org
High-throughput docking is an established computational screening approach in drug
design. This methodology enables a rapid identification of biologically active hit compounds …

[HTML][HTML] Practical considerations in virtual screening and molecular docking

M Berry, B Fielding, J Gamieldien - Emerging trends in …, 2015 - ncbi.nlm.nih.gov
Molecular docking has become an important common component of the drug discovery
toolbox, and its relative low-cost implications and perceived simplicity of use has stimulated …

Ligand docking and structure-based virtual screening in drug discovery

CN Cavasotto, AJ W Orry - Current topics in medicinal chemistry, 2007 - ingentaconnect.com
Ligand-docking-based methods are starting to play a critical role in lead discovery and
optimization, thus resulting in new 'drug-candidates'. They offer the possibility to go beyond …

Ligand-based structural hypotheses for virtual screening

AN Jain - Journal of medicinal chemistry, 2004 - ACS Publications
The majority of drug targets for small molecule therapeutics are proteins whose three-
dimensional structure is not known to sufficient resolution to permit structure-based design …

Beware of docking!

YC Chen - Trends in pharmacological sciences, 2015 - cell.com
Docking is now routine in virtual screening or lead optimization for drug screening and
design. The number of papers related to docking has dramatically increased over the past …

Virtual screening using protein− ligand docking: avoiding artificial enrichment

ML Verdonk, V Berdini, MJ Hartshorn… - Journal of chemical …, 2004 - ACS Publications
This study addresses a number of topical issues around the use of protein− ligand docking
in virtual screening. We show that, for the validation of such methods, it is key to use focused …

Molecular docking: challenges, advances and its use in drug discovery perspective

S Saikia, M Bordoloi - Current drug targets, 2019 - ingentaconnect.com
Molecular docking is a process through which small molecules are docked into the
macromolecular structures for scoring its complementary values at the binding sites. It is a …

Structure-based virtual screening for drug discovery: principles, applications and recent advances

E Lionta, G Spyrou, DK Vassilatis… - Current topics in …, 2014 - ingentaconnect.com
Structure-based drug discovery (SBDD) is becoming an essential tool in assisting fast and
cost-efficient lead discovery and optimization. The application of rational, structure-based …

[HTML][HTML] Docking covalent targets for drug discovery: stimulating the computer-aided drug design community of possible pitfalls and erroneous practices

AQK Oyedele, AT Ogunlana, ID Boyenle… - Molecular Diversity, 2023 - Springer
The continuous approval of covalent drugs in recent years for the treatment of diseases has
led to an increased search for covalent agents by medicinal chemists and computational …

High-throughput docking as a source of novel drug leads

JC Alvarez - Current opinion in chemical biology, 2004 - Elsevier
Receptor-based virtual screening has become a viable source of novel leads in the
pharmaceutical industry. The rapidly growing availability of structural information across …