Quo vadis, virtual screening? A comprehensive survey of prospective applications
P Ripphausen, B Nisius, L Peltason… - Journal of medicinal …, 2010 - ACS Publications
Virtual screening (VSa) of compound databases has become a popular hit identification
technique and a major playground for computational method development. 1 Relevant …
technique and a major playground for computational method development. 1 Relevant …
[HTML][HTML] Empirical scoring functions for structure-based virtual screening: applications, critical aspects, and challenges
IA Guedes, FSS Pereira, LE Dardenne - Frontiers in pharmacology, 2018 - frontiersin.org
Structure-based virtual screening (VS) is a widely used approach that employs the
knowledge of the three-dimensional structure of the target of interest in the design of new …
knowledge of the three-dimensional structure of the target of interest in the design of new …
Decision making in structure-based drug discovery: visual inspection of docking results
Molecular docking is a computational method widely used in drug discovery. Due to the
inherent inaccuracies of molecular docking, visual inspection of binding modes is a crucial …
inherent inaccuracies of molecular docking, visual inspection of binding modes is a crucial …
Combining docking and molecular dynamic simulations in drug design
H Alonso, AA Bliznyuk… - Medicinal research reviews, 2006 - Wiley Online Library
A rational approach is needed to maximize the chances of finding new drugs, and to exploit
the opportunities of potential new drug targets emerging from genomic and proteomic …
the opportunities of potential new drug targets emerging from genomic and proteomic …
[图书][B] Chemoinformatics approaches to virtual screening
Chemoinformatics is broadly a scientific discipline encompassing the design, creation,
organization, management, retrieval, analysis, dissemination, visualization and use of …
organization, management, retrieval, analysis, dissemination, visualization and use of …
Challenges and advances in computational docking: 2009 in review
E Yuriev, M Agostino… - Journal of Molecular …, 2011 - Wiley Online Library
Docking is a computational technique that places a small molecule (ligand) in the binding
site of its macromolecular target (receptor) and estimates its binding affinity. This review …
site of its macromolecular target (receptor) and estimates its binding affinity. This review …
Docking screens: right for the right reasons?
Whereas docking screens have emerged as the most practical way to use protein structure
for ligand discovery, an inconsistent track record raises questions about how well docking …
for ligand discovery, an inconsistent track record raises questions about how well docking …
Outstanding challenges in protein–ligand docking and structure‐based virtual screening
B Waszkowycz, DE Clark… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
With an ever‐increasing number of protein structures being solved by X‐ray crystallography,
the use of protein–ligand docking algorithms to assess candidate ligands for a binding site …
the use of protein–ligand docking algorithms to assess candidate ligands for a binding site …
Docking and scoring-Theoretically easy, practically impossible?
B Coupez, RA Lewis - Current medicinal chemistry, 2006 - ingentaconnect.com
Structure-based Drug Design (SBDD) is an essential part of the modern medicinal
chemistry, and has led to the acceleration of many projects, and even to drugs on the …
chemistry, and has led to the acceleration of many projects, and even to drugs on the …
The impact of supervised learning methods in ultralarge high-throughput docking
CN Cavasotto, JI Di Filippo - Journal of Chemical Information and …, 2023 - ACS Publications
Structure-based virtual screening methods are, nowadays, one of the key pillars of
computational drug discovery. In recent years, a series of studies have reported docking …
computational drug discovery. In recent years, a series of studies have reported docking …