Comparing the structures of proteins is crucial to gaining insight into protein evolution and
function. Here, we align the sequences of multiple protein structures by a dynamic …

Protein structure alignment methods are essential for many different challenges in protein
science, such as the determination of relations between proteins in the fold space or the …

A method was developed to compare protein structures and to combine them into a multiple
structure consensus. Previous methods of multiple structure comparison have only …

Multiple structural alignment is a fundamental problem in structural genomics. In this article,
we define a reliable and robust algorithm, MUSTANG (MUltiple STructural AligNment …

As a fundamental problem in computational structure biology, protein structure alignment
has attracted the focus of the community for more than 20 years. While the pairwise structure …

A major bottleneck in comparative protein structure modeling is the quality of input alignment
between the target sequence and the template structure. A number of alignment methods …

Background Protein tertiary structure comparisons are employed in various fields of
contemporary structural biology. Most structure comparison methods involve generation of …

Since the 1970s, after the seminal work of Rossmann and Argos (1978) comparing binding
sites of known enzyme structures, the comparison and alignment of protein structures has …

We have developed TM-align, a new algorithm to identify the best structural alignment
between protein pairs that combines the TM-score rotation matrix and Dynamic …

Protein structure alignment is a fundamental problem in computational structure biology.
Many programs have been developed for automatic protein structure alignment, but most of …