High-throughput docking as a source of novel drug leads
JC Alvarez - Current opinion in chemical biology, 2004 - Elsevier
Receptor-based virtual screening has become a viable source of novel leads in the
pharmaceutical industry. The rapidly growing availability of structural information across …
pharmaceutical industry. The rapidly growing availability of structural information across …
Molecular docking for drug discovery and development: a widely used approach but far from perfect
G Wang, W Zhu - Future Medicinal Chemistry, 2016 - Taylor & Francis
It is usually the first step to find active compounds from existing chemicals for a drug
discovery and development project. Although many pharmaceutical companies have their …
discovery and development project. Although many pharmaceutical companies have their …
Charting a path to success in virtual screening
S Forli - Molecules, 2015 - mdpi.com
Docking is commonly applied to drug design efforts, especially high-throughput virtual
screenings of small molecules, to identify new compounds that bind to a given target …
screenings of small molecules, to identify new compounds that bind to a given target …
Challenges, applications, and recent advances of protein-ligand docking in structure-based drug design
SZ Grinter, X Zou - Molecules, 2014 - mdpi.com
The docking methods used in structure-based virtual database screening offer the ability to
quickly and cheaply estimate the affinity and binding mode of a ligand for the protein …
quickly and cheaply estimate the affinity and binding mode of a ligand for the protein …
Docking-based virtual screening: recent developments
T Tuccinardi - Combinatorial chemistry & high throughput …, 2009 - ingentaconnect.com
Virtual (database) screening (VS) of molecules promises to accelerate the discovery of new
drugs and reduce costs by identifying molecules with high probabilities of binding to a target …
drugs and reduce costs by identifying molecules with high probabilities of binding to a target …
Comprehensive survey of consensus docking for high-throughput virtual screening
C Blanes-Mira, P Fernández-Aguado… - Molecules, 2022 - mdpi.com
The rapid advances of 3D techniques for the structural determination of proteins and the
development of numerous computational methods and strategies have led to identifying …
development of numerous computational methods and strategies have led to identifying …
Docking and virtual screening in drug discovery
M Kontoyianni - Proteomics for drug discovery: Methods and protocols, 2017 - Springer
Stages in a typical drug discovery organization include target selection, hit identification,
lead optimization, preclinical and clinical studies. Hit identification and lead optimization are …
lead optimization, preclinical and clinical studies. Hit identification and lead optimization are …
Virtual screening and fast automated docking methods
G Schneider, HJ Böhm - Drug discovery today, 2002 - Elsevier
Recent advances in high-throughput protein structure determination and in computational
chemistry have refocussed attention on virtual screening and fast automated docking …
chemistry have refocussed attention on virtual screening and fast automated docking …
MedusaDock 2.0: efficient and accurate protein–ligand docking with constraints
J Wang, NV Dokholyan - Journal of chemical information and …, 2019 - ACS Publications
Molecular docking is the key ingredient of virtual drug screening, a promising and cost-
effective approach for finding new drugs. A critical limitation of this approach is the …
effective approach for finding new drugs. A critical limitation of this approach is the …
Outstanding challenges in protein–ligand docking and structure‐based virtual screening
B Waszkowycz, DE Clark… - Wiley Interdisciplinary …, 2011 - Wiley Online Library
With an ever‐increasing number of protein structures being solved by X‐ray crystallography,
the use of protein–ligand docking algorithms to assess candidate ligands for a binding site …
the use of protein–ligand docking algorithms to assess candidate ligands for a binding site …