[HTML][HTML] New machine learning and physics-based scoring functions for drug discovery

IA Guedes, AMS Barreto, D Marinho, E Krempser… - Scientific reports, 2021 - nature.com
Scoring functions are essential for modern in silico drug discovery. However, the accurate
prediction of binding affinity by scoring functions remains a challenging task. The …

An overview of scoring functions used for protein–ligand interactions in molecular docking

J Li, A Fu, L Zhang - Interdisciplinary Sciences: Computational Life …, 2019 - Springer
Currently, molecular docking is becoming a key tool in drug discovery and molecular
modeling applications. The reliability of molecular docking depends on the accuracy of the …

ID-Score: a new empirical scoring function based on a comprehensive set of descriptors related to protein–ligand interactions

GB Li, LL Yang, WJ Wang, LL Li… - Journal of chemical …, 2013 - ACS Publications
Scoring functions have been widely used to assess protein–ligand binding affinity in
structure-based drug discovery. However, currently commonly used scoring functions face …

Improving scoring‐docking‐screening powers of protein–ligand scoring functions using random forest

C Wang, Y Zhang - Journal of computational chemistry, 2017 - Wiley Online Library
The development of new protein–ligand scoring functions using machine learning
algorithms, such as random forest, has been of significant interest. By efficiently utilizing …

Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term

L Zheng, J Meng, K Jiang, H Lan, Z Wang… - Briefings in …, 2022 - academic.oup.com
Scoring functions are important components in molecular docking for structure-based drug
discovery. Traditional scoring functions, generally empirical-or force field-based, are robust …

Scoring functions and their evaluation methods for protein–ligand docking: recent advances and future directions

SY Huang, SZ Grinter, X Zou - Physical Chemistry Chemical Physics, 2010 - pubs.rsc.org
The scoring function is one of the most important components in structure-based drug
design. Despite considerable success, accurate and rapid prediction of protein–ligand …

Comparative assessment of scoring functions: the CASF-2016 update

M Su, Q Yang, Y Du, G Feng, Z Liu, Y Li… - Journal of chemical …, 2018 - ACS Publications
In structure-based drug design, scoring functions are often employed to evaluate protein–
ligand interactions. A variety of scoring functions have been developed so far, and thus …

Classification of current scoring functions

J Liu, R Wang - Journal of chemical information and modeling, 2015 - ACS Publications
Scoring functions are a class of computational methods widely applied in structure-based
drug design for evaluating protein–ligand interactions. Dozens of scoring functions have …

Converging a Knowledge-Based Scoring Function: DrugScore2018

J Dittrich, D Schmidt, C Pfleger… - Journal of chemical …, 2018 - ACS Publications
We present DrugScore2018, a new version of the knowledge-based scoring function
DrugScore, which builds upon the same formalism used to derive DrugScore but exploits a …

Statistical potential for modeling and ranking of protein–ligand interactions

H Fan, D Schneidman-Duhovny, JJ Irwin… - Journal of chemical …, 2011 - ACS Publications
Applications in structural biology and medicinal chemistry require protein–ligand scoring
functions for two distinct tasks:(i) ranking different poses of a small molecule in a protein …