Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: a review
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, there has been a …
affinities has the potential to transform drug discovery. In recent years, there has been a …
Binding affinity prediction for protein–ligand complex using deep attention mechanism based on intermolecular interactions
Background Accurate prediction of protein–ligand binding affinity is important for lowering
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
Computationally predicting binding affinity in protein–ligand complexes: free energy-based simulations and machine learning-based scoring functions
Accurately predicting protein–ligand binding affinities can substantially facilitate the drug
discovery process, but it remains as a difficult problem. To tackle the challenge, many …
discovery process, but it remains as a difficult problem. To tackle the challenge, many …
Effects of data quality and quantity on deep learning for protein-ligand binding affinity prediction
FJ Fan, Y Shi - Bioorganic & Medicinal Chemistry, 2022 - Elsevier
Prediction of protein-ligand binding affinities is crucial for computational drug discovery. A
number of deep learning approaches have been developed in recent years to improve the …
number of deep learning approaches have been developed in recent years to improve the …
BgN-Score and BsN-Score: Bagging and boosting based ensemble neural networks scoring functions for accurate binding affinity prediction of protein-ligand …
HM Ashtawy, NR Mahapatra - BMC bioinformatics, 2015 - Springer
Background Accurately predicting the binding affinities of large sets of protein-ligand
complexes is a key challenge in computational biomolecular science, with applications in …
complexes is a key challenge in computational biomolecular science, with applications in …
DEELIG: A deep learning approach to predict protein-ligand binding affinity
Protein-ligand binding prediction has extensive biological significance. Binding affinity helps
in understanding the degree of protein-ligand interactions and is a useful measure in drug …
in understanding the degree of protein-ligand interactions and is a useful measure in drug …
CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …
challenge currently encountered in drug discovery. Recent advances have manifested a …
Supervised machine learning methods applied to predict ligand-binding affinity
GS Heck, VO Pintro, RR Pereira… - Current medicinal …, 2017 - ingentaconnect.com
Background: Calculation of ligand-binding affinity is an open problem in computational
medicinal chemistry. The ability to computationally predict affinities has a beneficial impact …
medicinal chemistry. The ability to computationally predict affinities has a beneficial impact …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …