Improving scoring‐docking‐screening powers of protein–ligand scoring functions using random forest
The development of new protein–ligand scoring functions using machine learning
algorithms, such as random forest, has been of significant interest. By efficiently utilizing …
algorithms, such as random forest, has been of significant interest. By efficiently utilizing …
Comparative assessment of scoring functions on an updated benchmark: 2. Evaluation methods and general results
Our comparative assessment of scoring functions (CASF) benchmark is created to provide
an objective evaluation of current scoring functions. The key idea of CASF is to compare the …
an objective evaluation of current scoring functions. The key idea of CASF is to compare the …
Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term
Scoring functions are important components in molecular docking for structure-based drug
discovery. Traditional scoring functions, generally empirical-or force field-based, are robust …
discovery. Traditional scoring functions, generally empirical-or force field-based, are robust …
Delta machine learning to improve scoring-ranking-screening performances of protein–ligand scoring functions
Protein–ligand scoring functions are widely used in structure-based drug design for fast
evaluation of protein–ligand interactions, and it is of strong interest to develop scoring …
evaluation of protein–ligand interactions, and it is of strong interest to develop scoring …
Comparative assessment of scoring functions on an updated benchmark: 1. Compilation of the test set
Y Li, Z Liu, J Li, L Han, J Liu, Z Zhao… - Journal of chemical …, 2014 - ACS Publications
Scoring functions are often applied in combination with molecular docking methods to
predict ligand binding poses and ligand binding affinities or to identify active compounds …
predict ligand binding poses and ligand binding affinities or to identify active compounds …
Comparative assessment of scoring functions: the CASF-2016 update
In structure-based drug design, scoring functions are often employed to evaluate protein–
ligand interactions. A variety of scoring functions have been developed so far, and thus …
ligand interactions. A variety of scoring functions have been developed so far, and thus …
Tapping on the black box: how is the scoring power of a machine-learning scoring function dependent on the training set?
In recent years, protein–ligand interaction scoring functions derived through machine-
learning are repeatedly reported to outperform conventional scoring functions. However …
learning are repeatedly reported to outperform conventional scoring functions. However …
ID-Score: a new empirical scoring function based on a comprehensive set of descriptors related to protein–ligand interactions
GB Li, LL Yang, WJ Wang, LL Li… - Journal of chemical …, 2013 - ACS Publications
Scoring functions have been widely used to assess protein–ligand binding affinity in
structure-based drug discovery. However, currently commonly used scoring functions face …
structure-based drug discovery. However, currently commonly used scoring functions face …
Task-specific scoring functions for predicting ligand binding poses and affinity and for screening enrichment
HM Ashtawy, NR Mahapatra - Journal of chemical information and …, 2018 - ACS Publications
Molecular docking, scoring, and virtual screening play an increasingly important role in
computer-aided drug discovery. Scoring functions (SFs) are typically employed to predict the …
computer-aided drug discovery. Scoring functions (SFs) are typically employed to predict the …
Featurization strategies for protein–ligand interactions and their applications in scoring function development
The predictive performance of classical scoring functions (SFs) seems to have reached a
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …