AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization
JO Spiegel, JD Durrant - Journal of cheminformatics, 2020 - Springer
… To illustrate both de novo design and lead optimization, we here apply AutoGrow4 to the …
AutoGrow4 produces drug-like compounds with better predicted binding affinities than FDA-…
AutoGrow4 produces drug-like compounds with better predicted binding affinities than FDA-…
Reinforced genetic algorithm for structure-based drug design
… de novo drug design algorithm that outperforms baseline methods consistently through thorough
empirical studies on optimizing … Autogrow 4.0, without using other tricks such as elitism. …
empirical studies on optimizing … Autogrow 4.0, without using other tricks such as elitism. …
Targeting the Poly (ADP-Ribose) Polymerase-1 Catalytic Pocket Using AutoGrow4, a Genetic Algorithm for De Novo Design
JO Spiegel - 2020 - search.proquest.com
… AutoGrow4 is a free and open-source program for de novo drug design that uses a genetic
algorithm … has been successfully applied to drug discovery, lead optimization, and compound …
algorithm … has been successfully applied to drug discovery, lead optimization, and compound …
Computational design of drugs for Epilepsy using a novel guided evolutionary algorithm for enhanced Blood Brain Barrier permeability
S Talluri - 2024 - chemrxiv.org
… Autogrow4 was selected for the design of drugs to target GABA-T in this work, to utilize …
AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization. …
AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization. …
AutoGrow: a novel algorithm for protein inhibitor design
JD Durrant, RE Amaro… - … biology & drug design, 2009 - Wiley Online Library
… such as those associated with de novo drug discovery (43). These … We note that AutoGrow
is open source, and we encourage … As evolutionary algorithms are often non-deterministic, we …
is open source, and we encourage … As evolutionary algorithms are often non-deterministic, we …
Structure-based Drug Design Benchmark: Do 3D Methods Really Dominate?
… We emphasize that 1D/2D ligand-centric drug design methods can be used in … AutoGrow4,
a 2D molecular graph-based genetic algorithm, dominates SBDD in terms of optimization …
a 2D molecular graph-based genetic algorithm, dominates SBDD in terms of optimization …
LEADD: Lamarckian evolutionary algorithm for de novo drug design
A Kerstjens, H De Winter - Journal of Cheminformatics, 2022 - Springer
… In this paper we describe LEADD, an evolutionary algorithm (EA) for de novo drug design
and optimization. EAs have a rich history of being applied to DNDD [16, 24,25,26,27, 30, 34,35,…
and optimization. EAs have a rich history of being applied to DNDD [16, 24,25,26,27, 30, 34,35,…
Docking-based generative approaches in the search for new drug candidates
… encoded by a genetic algorithm and tabu search is used to find optimal linkers for … AutoGrow4
35 is a large open-source GA-based package, fit for both de novo and lead optimization …
35 is a large open-source GA-based package, fit for both de novo and lead optimization …
Implementing a scoring function based on interaction fingerprint for Autogrow4: Protein Kinase CK1δ as a case study
… Concerning this, the open-source software Autogrow, … a genetic algorithm and a molecular
docking software for de … , we performed both a de novo and a lead-optimization run (as …
docking software for de … , we performed both a de novo and a lead-optimization run (as …
iSyn: WebGL-based interactive de novo drug design
… It is free and open source, available at http://istar.cse.cuhk.… AutoGrow utilizes an evolutionary
algorithm in conjunction … To guide ligand optimization, AutoGrow 3.0 uses the rules of click …
algorithm in conjunction … To guide ligand optimization, AutoGrow 3.0 uses the rules of click …