… splicing across a population of single cells, but as far as we are aware, BRIE is the first
method to be able to quantify splicing in individual single cells and to detect differential splicing …

… to quantify alternative splicing in individual cells would … splicing across a population of
single cells, but as far as we are aware BRIE is the first method to be able to quantify splicing …

… of splicing phenotypes within the splicing quantification task … the splicing ratio from a set
of features associated with cell-… By default in brie-quant, we filter out events with (1) less than …

… of splicing phenotypes within the splicing quantification task itself… the splicing ratio from a set
of features associated with cell-… By default in brie-quant, we filter out events with 1) less than …

… single cells tend to express one major transcript variant of a gene, and the diversity of transcript
variants in cell … Therefore, we believe that BRIE is not suitable for testing the cell model …

… BRIE, the first and one of the very few methods for splicing quantification from scRNA-seq
[20]. … In order to quantify the exon-skipping splicing with BRIE, we need a set of good quality …

… the first time, characterization of transcriptome-wide exon-level alternative splicing events at
the … In addition to characterizing exclusion and inclusion rates across identical cells, BRIE is …

… Figure 1 Alternative splicing and gene regulatory network profiles of pancreatic islet … BRIE:
transcriptome-wide splicing quantification in single cells. Genome Biol 18, 123. Lee, Y., and …

… analyze splicing dynamics at single-cell resolution. Here, we present MARVEL, a comprehensive
R package for single-cell splicing analysis … For BRIE, differential splicing analysis was …

… The following settings were used to quantify splicing with BRIE: exons have to be located
on autosomes and input chromosomes and should not be overlapped by any other …