… with domestication and improvement selection signals and 162 loci, 84 of which are novel, …
Using pan-genome analyses, we identify 32,569 and 8851 non-reference genes lost from …

… been domesticated by humans and have dominated modern … that the cotton genome might
have responded to selection to … a thorough analysis of pan-genome and core genome sizes …

… selection and breeding of cotton for improved traits through … Pan-genome data studies
has advanced cotton breeding by … identification of genes lost during domestication and plant …

… showed that gene loss from the domestication process was … pan-genome” for plants, which
extends the concept of the … pangenomic genetic diversity in retrieving the “missing heritability” …

… of the genetic basis of genome evolution, crop domestication, … gene-based pan-genome, a
sequence-based pan-genome … The first cotton pan-genome was constructed based on the re…

… as within and among the four independently domesticated … a pan-genome map for Gossypium,
we selected ten cotton species for … Gain and loss of total gene families in each species are …

… genes were disproportionally lost during both domestication … species contains 477 Mb new
sequence, which is larger than … been applied in pan-genomic studies in cotton, tomato, etc. [6…

… ’s genetic diversity and population structure, we sequenced the … , we identified 1,099 PAVs
in 225 regions under selection, including … Loss of seed SHT was a crucial step in cereal crop …

… domesticated form of the economically most important cotton … Of the tetraploid cotton
pan-genome made by combining our … perhaps selection during domestication was for gene family …

… Domesticated around 8,000 years ago 1 , cotton cultivation began with a reduction in genetic
diversity during the initial selection … imputations through pan-genome reconstruction could …