Resilient Cotton for Abiotic Stresses: Realizing Genetic Gains Through Translational Genomics

NM Boopathi, SN Jena, B Joshi, N Premalatha… - Genomic Designing for …, 2022 - Springer
… of Gossypium that were lost during domestication but are now useful … selected than other
traits during the long history of cottonPan-genome analysis (or simply panomics) thus provide a …

Panvariome and pangenome of 1,020 global peach accessions shed light on evolution pattern, hidden natural variation and efficient gene discovery

Y Li, P Arús, J Wu, G Zhu, W Fang, C Chen, X Wang… - 2024 - researchsquare.com
… In total, we identi ed 805 favorable and 409 unfavorable genes during domestication (Fig…
Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

Unraveling the genetic basis of superior traits in Gossypium barbadense: From phenotype to genotype

Y Cai, Y Qu, L Yang, J Liu, P Huo, Y Duan… - Industrial Crops and …, 2024 - Elsevier
genetic resources and potential breeding markers for cotton … study were selected as the
Chinese sea island cotton variety, … : (1) removing sites with a missing rate greater than 15% in the …

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

SP Gordon, B Contreras-Moreira, JJ Levy… - Nature …, 2020 - nature.com
… by selection and genetic bottlenecks during domestication. … , such as synthetic allotetraploid
cottons and wild allopolyploid … While assembly quality could affect the pan-genome analysis, …

[PDF][PDF] Improved chromosome genome assembly, structural variation insight, and annotation of Gossypium barbadense L.'Pima-S6'

L Herrera-Estrella - 2022 - scholar.archive.org
… annotation of Pima-S6 cotton and its comparison at the chromosome and protein level to …
Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

Pangenomics in Agriculture

A GÖZDE, SZ YILDIZ, P KNIGHT… - … Sequencing and …, 2022 - books.google.com
… content variation in the Brachypodium distachyon pan-genome correlates with … Cotton
pan-genome retrieves the lost sequences and genes during domestication and selection

Insights into genetic diversity and functional significance of the bHLH genes in cotton fiber development

M Abbas, Z Youyi, C Lu, MA Khan… - Industrial Crops and …, 2024 - Elsevier
… The data was filtered, and accessions with missing values were … from a previously published
dataset were retrieved. To validate the … underwent selection during cotton domestication. …

De-novo Domestication for Improving Salt Tolerance in Crops

A Razzaq, F Saleem, SH Wani… - Frontiers in plant …, 2021 - frontiersin.org
… the unique genes that have been lost during domestication. … in cotton and provided rich
genetic resources for cotton genetic … of how selection during domestication may modify the rate of …

Legume pangenome: status and scope for crop improvement

UC Jha, H Nayyar, EJB von Wettberg, YD Naik… - Plants, 2022 - mdpi.com
… a loss of genetic diversity during domestication and breeding … an additional 198.34 Mbp
sequence assembly compared to … of repeated selection on particular loci, pathways, or gene

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - … genetics, 2023 - nature.com
… regulation of fiber development in allotetraploid cotton Gossypium hirsutum by sequencing
… effect of domestication selection on fiber quality-associated loci. In this analysis, 3,552 cotton