… genes in cotton. In this study, YM11, an accession with elite cold tolerance and adaptation
to the climate of Xinjiang, was selected for … We used the genome sequence of YM11 as a …

… that BnLTP genes may be lost in QU and duplicated in GG during … B Upstream regions of the
genes in the pan-genome … different forms and levels of selection during domestication. In the …

… construction of a diploid potato pan-genome sequence of nine … in selecting the type
accessions of each taxa to sequence. … alleles can be retrieved from each genomic region, based …

… We have constructed a pan-genome graph of the 230 … of 54,416 TR variation loci that were
missing from the reference genome. … From the sequencing results, we selected 3 homozygous …

… on gene sequences and new target sites in variant-specific … oleracea [67] and disease
resistance gene loss in cotton [65] … lost due to domestication selection including the Yr36 gene …

… Individuals with desired traits were then selected and further … domesticated and wild
accessions (Chapter 3). These seven genome assemblies were used to assemble a pan-genome of …

… ability of genetic transformation, thus, we selected it for … the rapid improvement in domestication
and biomass-related … However, this event predates the polyploidy in crops such as cotton …

… negative selection for the allele during domestication was … , possibly through wild introgression
during recent breeding … Cotton pan-genome retrieves the lost sequences and genes …

… pan-genome projects start to reveal a more comprehensive picture of the genetic makeup
and the diversity among domesticated … Careful selection of parental lines and the creation of …

… to differentiation, polyploidy and artificial domestication. … evolution when it is equal to 1 and
purifying selection when it is … of OFP genes, we have analyzed the front 2000 bp sequence of …