Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle

FM Gabhann, AS Popel - American Journal of Physiology …, 2007 - journals.physiology.org
VEGF receptors (VEGFRs) by VEGF family members in skeletal muscle, we develop a
computational model of VEGF isoforms (VEGF 121 , VEGF … extracellular matrix in in vivo tissue. We …

Differential binding of VEGF isoforms to VEGF receptor 2 in the presence of neuropilin-1: a computational model

F Mac Gabhann, AS Popel - American Journal of …, 2005 - journals.physiology.org
… a computational model of the interactions between NRP1 and … complexes by the isoforms
VEGF 121 and VEGF 165 . We … computational models of endothelial cell behavior in in vitro

[HTML][HTML] A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands

LE Clegg, F Mac Gabhann - PLoS computational biology, 2017 - journals.plos.org
… Additionally, our model predicts that VEGF isoform-specific … -specific phosphorylation in
vivo, mediated by Neuropilin-1. … similar to that for VEGF, as both interactions occur via heparin-…

[HTML][HTML] Formation of VEGF isoform-specific spatial distributions governing angiogenesis: computational analysis

P Vempati, AS Popel, F Mac Gabhann - BMC systems biology, 2011 - Springer
… release regulate VEGF diffusion in vivo are therefore not yet … VEGF isoforms also differentially
bind to neuropilin-1 and -2 (… 2 primarily details the interactions of secreted VEGF 165 , we …

[HTML][HTML] Molecular pharmacology of VEGF-A isoforms: binding and signalling at VEGFR2

CJ Peach, VW Mignone, MA Arruda… - International journal of …, 2018 - mdpi.com
… bioavailability and interaction with the co-receptor Neuropilin-1. … both in vitro and in vivo
experimental evidence, VEGF xxx a … Computational modelling of systems pharmacology have …

[HTML][HTML] Structural basis for selective vascular endothelial growth factor-A (VEGF-A) binding to neuropilin-1

MW Parker, P Xu, X Li, CW Vander Kooi - Journal of Biological Chemistry, 2012 - ASBMB
… Using an in vitro binding assay, we have determined the … arginine is essential for the
interaction of VEGF-A with Nrp1 and … For example, VEGF-A binds to VEGFR-1 and VEGFR-2, but …

VEGF-A121a binding to Neuropilins–A concept revisited

S Sarabipour, F Mac Gabhann - Cell Adhesion & Migration, 2018 - Taylor & Francis
isoforms of vascular endothelial growth factor A (VEGF-A) can bind to the receptor tyrosine
kinases VEGFR-1 and VEGFR-2… cells in vitro suggests that these components are interacting (…

Predicting the effects of anti-angiogenic agents targeting specific VEGF isoforms

SD Finley, AS Popel - The AAPS journal, 2012 - Springer
… , and co-receptors Neuropilin-1 and Neuropilin-2. We utilize … interactions of two VEGF isoforms
(VEGF 121 and VEGF 165 )… Still, our computational studies complement the experimental …

[HTML][HTML] Site-specific phosphorylation of VEGFR2 is mediated by receptor trafficking: insights from a computational model

LW Clegg, F Mac Gabhann - PLoS computational biology, 2015 - journals.plos.org
… predict that VEGF immobilization, interactions with Neuropilin-1, … only VEGF 188 or modified
protease-resistant VEGF isoforms … We developed a model to simulate in vitro experiments in …

[HTML][HTML] Pharmacokinetics and pharmacodynamics of VEGF-neutralizing antibodies

SD Finley, MO Engel-Stefanini, PI Imoukhuede… - BMC systems …, 2011 - Springer
… In the present study, we extend the previous computational model … The molecular interactions
between the VEGF isoforms and … in the effect of neuropilin density, as only in vitro data are …