Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences

DS Hibbett, A Ohman, D Glotzer, M Nuhn, P Kirk… - Fungal biology …, 2011 - Elsevier
… of formal classification of environmental sequences gains … on environmental sequences,
with an environmental sample … based solely on environmental sequences can be rich in …

Sequence-based classification and identification of Fungi

D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai… - Mycologia, 2016 - Taylor & Francis
… taxa known only from environmental sequences need to be classified and linked to … in
Fungi and options for formal classification of environmental sequences. Fungal Biol Rev …

[HTML][HTML] Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

R Lücking, DL Hawksworth - IMA fungus, 2018 - Springer
… a formal nomenclature of sequence-based, voucherless Fungi, given that environmental
sequencing has … To avoid parallel classifications based on different markers, sequence-based …

Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

B Wu, M Hussain, W Zhang, M Stadler, X Liu, M Xiang - Mycology, 2019 - Taylor & Francis
… Moreover, it has been speculated that the current use of high-throughput sequencing
Recently, the formal classification of environmental sequences and permission of DNA sequence

[HTML][HTML] Considerations and consequences of allowing DNA sequence data as types of fungal taxa

JC Zamora, M Svensson, R Kirschner, I Olariaga… - IMA fungus, 2018 - Springer
… to classify biological … DNA sequences alone (of any region and extent) to serve as types of
taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), …

The term 'Anthropocene'in the context of formal geological classification

PL Gibbard, MJC Walker - Geological Society, London, Special …, 2014 - lyellcollection.org
… system of classification in which time-rock sequences (chron… on much of the natural
environment, we continue to live … term ‘Holocene’ was proposed and formally ratified by the IUGS. …

DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences

M Öpik, J Davison, M Moora, M Zobel - Botany, 2014 - cdnsciencepub.com
… AMF in environmental samples based on sequence data. We … AMF sequences detected
from the environment need to be … formal classification of environmental sequences. Fung. Biol. …

[HTML][HTML] Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon

M Thines, PW Crous, MC Aime, T Aoki, L Cai, KD Hyde… - IMA fungus, 2018 - Springer
… growing number of environmental sequences that cannot be … to formally name fungi on the
basis of sequence data only. … Additionally, a classification based on sequences as types is …

Fungal taxonomy and sequence-based nomenclature

R Lücking, MC Aime, B Robbertse, AN Miller… - Nature …, 2021 - nature.com
… sampling, and environmental sequencing has uncovered new … sequences 28 ; however,
they are not able to satisfactorily recognize species-level lineages or derive formal classifications

[HTML][HTML] MLTreeMap-accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

M Stark, SA Berger, A Stamatakis, C von Mering - BMC genomics, 2010 - Springer
… Owing to the size and nature of the input data, formal phylogenetics algorithms are relatively
… for the functional classification of a set of environmental sequence samples. Three datasets …