[HTML][HTML] Analysis and visualization of longitudinal genomic and clinical data from the AACR project GENIE biopharma collaborative in cBioPortal

I de Bruijn, R Kundra, B Mastrogiacomo, TN Tran… - Cancer research, 2023 - AACR
International cancer registries make real-world genomic and clinical data available, but their
joint analysis remains a challenge. AACR Project GENIE, an international cancer registry …

Personalized cancer therapy—leveraging a knowledge base for clinical decision-making

EI Dumbrava, F Meric-Bernstam - Molecular Case …, 2018 - molecularcasestudies.cshlp.org
Next-generation sequencing (NGS), also known as massively parallel sequencing, is rapidly
being incorporated into oncology practice. Interpretation of genomic reports and selecting …

[HTML][HTML] Clinical trial design in the era of precision medicine

E Fountzilas, AM Tsimberidou, HH Vo, R Kurzrock - Genome medicine, 2022 - Springer
Recent rapid biotechnological breakthroughs have led to the identification of complex and
unique molecular features that drive malignancies. Precision medicine has exploited next …

Comprehensive genomic and transcriptomic analysis for guiding therapeutic decisions in patients with rare cancers

P Horak, C Heining, S Kreutzfeldt, B Hutter, A Mock… - Cancer discovery, 2021 - AACR
The clinical relevance of comprehensive molecular analysis in rare cancers is not
established. We analyzed the molecular profiles and clinical outcomes of 1,310 patients …

Delivering precision oncology to patients with cancer

J Mateo, L Steuten, P Aftimos, F André, M Davies… - Nature medicine, 2022 - nature.com
With the increasing use of genomic profiling for diagnosis and therapy guidance in many
tumor types, precision oncology is rapidly reshaping cancer care. However, the current …

Real-world evidence in support of precision medicine: clinico-genomic cancer data as a case study

V Agarwala, S Khozin, G Singal, C O'Connell, D Kuk… - Health …, 2018 - healthaffairs.org
The majority of US adult cancer patients today are diagnosed and treated outside the
context of any clinical trial (that is, in the real world). Although these patients are not part of a …

Precision oncology beyond targeted therapy: combining omics data with machine learning matches the majority of cancer cells to effective therapeutics

MQ Ding, L Chen, GF Cooper, JD Young, X Lu - Molecular cancer research, 2018 - AACR
Precision oncology involves identifying drugs that will effectively treat a tumor and then
prescribing an optimal clinical treatment regimen. However, most first-line chemotherapy …

Towards precision medicine in the clinic: from biomarker discovery to novel therapeutics

DC Collins, R Sundar, JSJ Lim, TA Yap - Trends in pharmacological …, 2017 - cell.com
Precision medicine continues to be the benchmark to which we strive in cancer research.
Seeking out actionable aberrations that can be selectively targeted by drug compounds …

[HTML][HTML] Institutional implementation of clinical tumor profiling on an unselected cancer population

LM Sholl, K Do, P Shivdasani, E Cerami, AM Dubuc… - JCI insight, 2016 - ncbi.nlm.nih.gov
BACKGROUND. Comprehensive genomic profiling of a patient's cancer can be used to
diagnose, monitor, and recommend treatment. Clinical implementation of tumor profiling in …

Characterization of cancer genomic heterogeneity by next-generation sequencing advances precision medicine in cancer treatment

J Zhang, SS Späth, SL Marjani… - Precision clinical …, 2018 - academic.oup.com
Cancer is a heterogeneous disease with unique genomic and phenotypic features that differ
between individual patients and even among individual tumor regions. In recent years, large …