Harnessing heterologous and endogenous CRISPR-Cas machineries for efficient markerless genome editing in Clostridium

ME Pyne, MR Bruder, M Moo-Young, DA Chung… - Scientific reports, 2016 - nature.com
Application of CRISPR-Cas9 systems has revolutionized genome editing across all domains
of life. Here we report implementation of the heterologous Type II CRISPR-Cas9 system in …

Bacterial CRISPR: accomplishments and prospects

JM Peters, MR Silvis, D Zhao, JS Hawkins… - Current opinion in …, 2015 - Elsevier
Highlights•Cas9 provides a powerful counter-selection tool for genome editing in
bacteria.•CRISPRi is a versatile method for repressing gene expression.•With further …

Enhanced genome editing with Cas9 ribonucleoprotein in diverse cells and organisms

B Farboud, E Jarvis, TL Roth, J Shin, JE Corn… - JoVE (Journal of …, 2018 - jove.com
Site-specific eukaryotic genome editing with CRISPR (clustered regularly interspaced short
palindromic repeats)-Cas (CRISPR-associated) systems has quickly become a …

A versatile genetic engineering toolkit for E. coli based on CRISPR-prime editing

Y Tong, TS Jørgensen, CM Whitford, T Weber… - Nature …, 2021 - nature.com
CRISPR base editing is a powerful method to engineer bacterial genomes. However, it
restricts editing to single-nucleotide substitutions. Here, to address this challenge, we adapt …

CRISPR technologies for bacterial systems: current achievements and future directions

KR Choi, SY Lee - Biotechnology Advances, 2016 - Elsevier
Throughout the decades of its history, the advances in bacteria-based bio-industries have
coincided with great leaps in strain engineering technologies. Recently unveiled clustered …

Systematically attenuating DNA targeting enables CRISPR-driven editing in bacteria

D Collias, E Vialetto, J Yu, K Co, ÉH Almási… - Nature …, 2023 - nature.com
Bacterial genome editing commonly relies on chromosomal cleavage with Cas nucleases to
counter-select against unedited cells. However, editing normally requires efficient …

A novel and efficient method for bacteria genome editing employing both CRISPR/Cas9 and an antibiotic resistance cassette

H Zhang, QX Cheng, AM Liu, GP Zhao… - Frontiers in …, 2017 - frontiersin.org
As Cas9-mediated cleavage requires both protospacer and protospacer adjacent motif
(PAM) sequences, it is impossible to employ the CRISPR/Cas9 system to directly edit …

[HTML][HTML] CRISPR-assisted editing of bacterial genomes

W Jiang, D Bikard, D Cox, F Zhang… - Nature …, 2013 - ncbi.nlm.nih.gov
The targeting of nucleases to specific DNA sequences facilitates genome editing. Recent
work demonstrated that the CRISPR-associated (Cas) nuclease Cas9 can be targeted to …

Targeted nucleotide editing technologies for microbial metabolic engineering

T Arazoe, A Kondo, K Nishida - Biotechnology journal, 2018 - Wiley Online Library
Since the emergence of programmable RNA‐guided nucleases based on clustered
regularly interspaced short palindromic repeats (CRISPR)/CRISPR‐associated protein …

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

W Jiang, D Bikard, D Cox, F Zhang… - Nature biotechnology, 2013 - nature.com
Here we use the clustered, regularly interspaced, short palindromic repeats (CRISPR)–
associated Cas9 endonuclease complexed with dual-RNAs to introduce precise mutations …