[PDF][PDF] RNA splicing analysis: from in vitro testing to single-cell imaging
RNA splicing is a fundamental regulatory process of gene expression and plays a pivotal
role in transcriptome complexity, cell-fate determination, and organism development. The …
role in transcriptome complexity, cell-fate determination, and organism development. The …
[HTML][HTML] Technological advances and computational approaches for alternative splicing analysis in single cells
WX Wen, AJ Mead, S Thongjuea - Computational and structural …, 2020 - Elsevier
Alternative splicing of RNAs generates isoform diversity, resulting in different proteins that
are necessary for maintaining cellular function and identity. The discovery of alternative …
are necessary for maintaining cellular function and identity. The discovery of alternative …
MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data
WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …
between individual cells but remains an understudied area due to the paucity of …
High-throughput quantification of splicing isoforms
JP Brosseau, JF Lucier, E Lapointe, M Durand… - Rna, 2010 - rnajournal.cshlp.org
Most human messenger RNAs (mRNAs) are alternatively spliced and many exhibit disease-
specific splicing patterns. However, the contribution of most splicing events to the …
specific splicing patterns. However, the contribution of most splicing events to the …
HiFENS: high-throughput FISH detection of endogenous pre-mRNA splicing isoforms
Splicing factors play an essential role in regulation of alternative pre-mRNA splicing. While
much progress has been made in delineating the mechanisms of the splicing machinery, the …
much progress has been made in delineating the mechanisms of the splicing machinery, the …
SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing
EK Flemington, SA Flemington… - Nucleic Acids …, 2023 - academic.oup.com
As a fundamental aspect of normal cell signaling and disease states, there is great interest
in determining alternative splicing (AS) changes in physiologic, pathologic, and …
in determining alternative splicing (AS) changes in physiologic, pathologic, and …
From single splicing events to thousands: the ambiguous step forward in splicing research
Since the discovery of RNA splicing in 1977 the knowledge of this important biological
process has increased steadily following the identification of many of the mechanistic …
process has increased steadily following the identification of many of the mechanistic …
SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing
I Pulyakhina, I Gazzoli, PAC 't Hoen… - Nucleic acids …, 2015 - academic.oup.com
Alternative splicing is a powerful mechanism present in eukaryotic cells to obtain a wide
range of transcripts and protein isoforms from a relatively small number of genes. The …
range of transcripts and protein isoforms from a relatively small number of genes. The …
Leveraging transcript quantification for fast computation of alternative splicing profiles
GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …