[PDF][PDF] RNA splicing analysis: from in vitro testing to single-cell imaging

X Ren, K Zhang, R Deng, J Li - Chem, 2019 - cell.com
RNA splicing is a fundamental regulatory process of gene expression and plays a pivotal
role in transcriptome complexity, cell-fate determination, and organism development. The …

[HTML][HTML] Technological advances and computational approaches for alternative splicing analysis in single cells

WX Wen, AJ Mead, S Thongjuea - Computational and structural …, 2020 - Elsevier
Alternative splicing of RNAs generates isoform diversity, resulting in different proteins that
are necessary for maintaining cellular function and identity. The discovery of alternative …

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data

WX Wen, AJ Mead, S Thongjuea - Nucleic Acids Research, 2023 - academic.oup.com
Alternative splicing is an important source of heterogeneity underlying gene expression
between individual cells but remains an understudied area due to the paucity of …

Global analysis of mRNA splicing

MJ Moore, PA Silver - Rna, 2008 - rnajournal.cshlp.org
Alternative mRNA splicing is a rich source of transcript diversity in eukaryotic cells with
broad roles in development and disease. Systems-wide experimental methods have started …

High-throughput quantification of splicing isoforms

JP Brosseau, JF Lucier, E Lapointe, M Durand… - Rna, 2010 - rnajournal.cshlp.org
Most human messenger RNAs (mRNAs) are alternatively spliced and many exhibit disease-
specific splicing patterns. However, the contribution of most splicing events to the …

HiFENS: high-throughput FISH detection of endogenous pre-mRNA splicing isoforms

A Shilo, G Pegoraro, T Misteli - Nucleic Acids Research, 2022 - academic.oup.com
Splicing factors play an essential role in regulation of alternative pre-mRNA splicing. While
much progress has been made in delineating the mechanisms of the splicing machinery, the …

SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing

EK Flemington, SA Flemington… - Nucleic Acids …, 2023 - academic.oup.com
As a fundamental aspect of normal cell signaling and disease states, there is great interest
in determining alternative splicing (AS) changes in physiologic, pathologic, and …

From single splicing events to thousands: the ambiguous step forward in splicing research

E Buratti, M Baralle, FE Baralle - Briefings in functional …, 2013 - academic.oup.com
Since the discovery of RNA splicing in 1977 the knowledge of this important biological
process has increased steadily following the identification of many of the mechanistic …

SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing

I Pulyakhina, I Gazzoli, PAC 't Hoen… - Nucleic acids …, 2015 - academic.oup.com
Alternative splicing is a powerful mechanism present in eukaryotic cells to obtain a wide
range of transcripts and protein isoforms from a relatively small number of genes. The …

Leveraging transcript quantification for fast computation of alternative splicing profiles

GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …