Barriers to genome editing with CRISPR in bacteria

JM Vento, N Crook, CL Beisel - Journal of Industrial Microbiology …, 2019 - academic.oup.com
Genome editing is essential for probing genotype–phenotype relationships and for
enhancing chemical production and phenotypic robustness in industrial bacteria. Currently …

Genome editing in bacteria: CRISPR-Cas and beyond

RD Arroyo-Olarte, R Bravo Rodriguez, E Morales-Ríos - Microorganisms, 2021 - mdpi.com
Genome editing in bacteria encompasses a wide array of laborious and multi-step methods
such as suicide plasmids. The discovery and applications of clustered regularly interspaced …

Multiplex genome editing of microorganisms using CRISPR-Cas

B Adiego-Perez, P Randazzo, JM Daran… - FEMS microbiology …, 2019 - academic.oup.com
Microbial production of chemical compounds often requires highly engineered microbial cell
factories. During the last years, CRISPR-Cas nucleases have been repurposed as powerful …

A novel and efficient method for bacteria genome editing employing both CRISPR/Cas9 and an antibiotic resistance cassette

H Zhang, QX Cheng, AM Liu, GP Zhao… - Frontiers in …, 2017 - frontiersin.org
As Cas9-mediated cleavage requires both protospacer and protospacer adjacent motif
(PAM) sequences, it is impossible to employ the CRISPR/Cas9 system to directly edit …

Bacterial Genome Editing with CRISPR-Cas9: Deletion, Integration, Single Nucleotide Modification, and Desirable “Clean” Mutant Selection in Clostridium beijerinckii …

Y Wang, ZT Zhang, SO Seo, P Lynn, T Lu… - ACS synthetic …, 2016 - ACS Publications
CRISPR-Cas9 has been demonstrated as a transformative genome engineering tool for
many eukaryotic organisms; however, its utilization in bacteria remains limited and …

Genome Editing with CRISPR‐Cas9 in Lactobacillus plantarum Revealed That Editing Outcomes Can Vary Across Strains and Between Methods

RT Leenay, JM Vento, M Shah, ME Martino… - Biotechnology …, 2019 - Wiley Online Library
Lactic‐acid bacteria such as Lactobacillus plantarum are commonly used for fermenting
foods and as probiotics, where increasingly sophisticated genome‐editing tools are …

Harnessing CRISPR–Cas systems for bacterial genome editing

K Selle, R Barrangou - Trends in microbiology, 2015 - cell.com
Manipulation of genomic sequences facilitates the identification and characterization of key
genetic determinants in the investigation of biological processes. Genome editing via …

A modified pCas/pTargetF system for CRISPR-Cas9-assisted genome editing in Escherichia coli

Q Li, B Sun, J Chen, Y Zhang… - Acta Biochimica et …, 2021 - academic.oup.com
The clustered regularly interspaced short palindromic repeats (CRISPR)-associated
nuclease 9 (Cas9)-based genome editing tool pCas/pTargetF system that we established …

Bacterial CRISPR: accomplishments and prospects

JM Peters, MR Silvis, D Zhao, JS Hawkins… - Current opinion in …, 2015 - Elsevier
Highlights•Cas9 provides a powerful counter-selection tool for genome editing in
bacteria.•CRISPRi is a versatile method for repressing gene expression.•With further …

Harnessing the type I CRISPR‐Cas systems for genome editing in prokaryotes

Z Xu, Y Li, M Li, H Xiang, A Yan - Environmental Microbiology, 2021 - Wiley Online Library
Genetic analysis is crucial to the understanding, exploitation, and control of microorganisms.
The advent of CRISPR‐Cas‐based genome‐editing techniques, particularly those mediated …