[HTML][HTML] Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

LE Flagel, JF Wendel, JA Udall - BMC genomics, 2012 - Springer
Background Modern allotetraploid cotton contains an “A” and “D” genome from an ancestral
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
Understanding the composition, evolution, and function of the Gossypium hirsutum (cotton)
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …

Duplicated genes evolve independently after polyploid formation in cotton

RC Cronn, RL Small, JF Wendel - Proceedings of the …, 1999 - National Acad Sciences
Of the many processes that generate gene duplications, polyploidy is unique in that entire
genomes are duplicated. This process has been important in the evolution of many …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …

Homoeologous nonreciprocal recombination in polyploid cotton

A Salmon, L Flagel, B Ying, JA Udall… - New …, 2010 - Wiley Online Library
Polyploid formation and processes that create partial genomic duplication generate
redundant genomic information, whose fate is of particular interest to evolutionary biologists …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
Polyploidy plays a major role in genome evolution, which corresponds to environmental
changes over millions of years. The mechanisms of genome evolution, particularly during …

Parallel and intertwining threads of domestication in allopolyploid cotton

D Yuan, CE Grover, G Hu, M Pan, ER Miller… - Advanced …, 2021 - Wiley Online Library
The two cultivated allopolyploid cottons, Gossypium hirsutum and Gossypium barbadense,
represent a remarkable example of parallel independent domestication, both involving …

[HTML][HTML] DNA sequence evolution and rare homoeologous conversion in tetraploid cotton

JT Page, ZS Liechty, RH Alexander, K Clemons… - PLoS …, 2016 - journals.plos.org
Allotetraploid cotton species are a vital source of spinnable fiber for textiles. The polyploid
nature of the cotton genome raises many evolutionary questions as to the relationships …

[HTML][HTML] Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …

[HTML][HTML] Homoeolog expression bias and expression level dominance in allopolyploid cotton

MJ Yoo, E Szadkowski, JF Wendel - Heredity, 2013 - nature.com
Allopolyploidy is an evolutionary and mechanistically intriguing process, in that it entails the
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …