Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen… - Nature Genetics, 2023 - nature.com
Broomcorn millet (Panicum miliaceum L.) is an orphan crop with the potential to improve
cereal production and quality, and ensure food security. Here we present the genetic …

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

J Shi, X Ma, J Zhang, Y Zhou, M Liu, L Huang… - Nature …, 2019 - nature.com
Broomcorn millet (Panicum miliaceum L.) has strong tolerance to abiotic stresses, and is
probably one of the oldest crops, with its earliest cultivation that dated back to ca.~ 10,000 …

A graph-based genome and pan-genome variation of the model plant Setaria

Q He, S Tang, H Zhi, J Chen, J Zhang, H Liang… - Nature …, 2023 - nature.com
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4
photosynthesis and developing approaches to adaptive breeding across multiple climates …

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

G Jia, X Huang, H Zhi, Y Zhao, Q Zhao, W Li, Y Chai… - Nature …, 2013 - nature.com
Foxtail millet (Setaria italica) is an important grain crop that is grown in arid regions. Here we
sequenced 916 diverse foxtail millet varieties, identified 2.58 million SNPs and used 0.8 …

Genome‐wide population structure analyses of three minor millets: Kodo millet, little millet, and proso millet

M Johnson, S Deshpande, M Vetriventhan… - The Plant …, 2019 - Wiley Online Library
Core Ideas Developed genome‐wide SNP marker data for kodo, proso, and little millet
Marker data used to analyze genetic diversity Heritability results of various traits used to …

The genome of broomcorn millet

C Zou, L Li, D Miki, D Li, Q Tang, L Xiao… - Nature …, 2019 - nature.com
Broomcorn millet (Panicum miliaceum L.) is the most water-efficient cereal and one of the
earliest domesticated plants. Here we report its high-quality, chromosome-scale genome …

High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement

C Liu, Y Wang, J Peng, B Fan, D Xu, J Wu, Z Cao… - Plant …, 2022 - cell.com
Mung bean is an economically important legume crop species that is used as a food,
consumed as a vegetable, and used as an ingredient and even as a medicine. To explore …

Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet

H Yan, M Sun, Z Zhang, Y Jin, A Zhang, C Lin, B Wu… - Nature Genetics, 2023 - nature.com
Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …

Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers

M Liu, Y Xu, J He, S Zhang, Y Wang, P Lu - International journal of …, 2016 - mdpi.com
Broomcorn millet (Panicum miliaceum L.), one of the first domesticated crops, has been
grown in Northern China for at least 10,000 years. The species is presently a minor crop …

Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber

H Li, S Wang, S Chai, Z Yang, Q Zhang, H Xin… - Nature …, 2022 - nature.com
Structural variants (SVs) represent a major source of genetic diversity and are related to
numerous agronomic traits and evolutionary events; however, their comprehensive …