[HTML][HTML] Modular (de) construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing

DC Volke, RA Martino, E Kozaeva, AM Smania… - Nature …, 2022 - nature.com
CRISPR/Cas technologies constitute a powerful tool for genome engineering, yet their use
in non-traditional bacteria depends on host factors or exogenous recombinases, which limits …

[HTML][HTML] A versatile genetic engineering toolkit for E. coli based on CRISPR-prime editing

Y Tong, TS Jørgensen, CM Whitford, T Weber… - Nature …, 2021 - nature.com
CRISPR base editing is a powerful method to engineer bacterial genomes. However, it
restricts editing to single-nucleotide substitutions. Here, to address this challenge, we adapt …

Bacterial Genome Editing with CRISPR-Cas9: Deletion, Integration, Single Nucleotide Modification, and Desirable “Clean” Mutant Selection in Clostridium beijerinckii …

Y Wang, ZT Zhang, SO Seo, P Lynn, T Lu… - ACS synthetic …, 2016 - ACS Publications
CRISPR-Cas9 has been demonstrated as a transformative genome engineering tool for
many eukaryotic organisms; however, its utilization in bacteria remains limited and …

Microbial base editing: a powerful emerging technology for microbial genome engineering

Y Wang, Y Liu, P Zheng, J Sun, M Wang - Trends in Biotechnology, 2021 - cell.com
Genome engineering is crucial for answering fundamental questions about, and exploring
practical applications of, microorganisms. Various microbial genome-engineering tools …

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

W Jiang, D Bikard, D Cox, F Zhang… - Nature biotechnology, 2013 - nature.com
Here we use the clustered, regularly interspaced, short palindromic repeats (CRISPR)–
associated Cas9 endonuclease complexed with dual-RNAs to introduce precise mutations …

[HTML][HTML] Harnessing CRISPR–Cas systems for bacterial genome editing

K Selle, R Barrangou - Trends in microbiology, 2015 - cell.com
Manipulation of genomic sequences facilitates the identification and characterization of key
genetic determinants in the investigation of biological processes. Genome editing via …

[HTML][HTML] Genome editing in bacteria: CRISPR-Cas and beyond

RD Arroyo-Olarte, R Bravo Rodriguez, E Morales-Ríos - Microorganisms, 2021 - mdpi.com
Genome editing in bacteria encompasses a wide array of laborious and multi-step methods
such as suicide plasmids. The discovery and applications of clustered regularly interspaced …

Multiplex genome editing of microorganisms using CRISPR-Cas

B Adiego-Perez, P Randazzo, JM Daran… - FEMS microbiology …, 2019 - academic.oup.com
Microbial production of chemical compounds often requires highly engineered microbial cell
factories. During the last years, CRISPR-Cas nucleases have been repurposed as powerful …

A compact Cascade–Cas3 system for targeted genome engineering

B Csörgő, LM León, IJ Chau-Ly, A Vasquez-Rifo… - Nature …, 2020 - nature.com
CRISPR–Cas technologies have enabled programmable gene editing in eukaryotes and
prokaryotes. However, the leading Cas9 and Cas12a enzymes are limited in their ability to …

[HTML][HTML] Highly efficient base editing in bacteria using a Cas9-cytidine deaminase fusion

K Zheng, Y Wang, N Li, FF Jiang, CX Wu, F Liu… - Communications …, 2018 - nature.com
The ability to precisely edit individual bases of bacterial genomes would accelerate the
investigation of the function of genes. Here we utilized a nickase Cas9-cytidine deaminase …