The limits to genomic predictions: role of σN in environmental stress survival of Pseudomonas putida

I Cases, V de Lorenzo - FEMS microbiology ecology, 2001 - academic.oup.com
Based on genomic data and on the phenotypes of an FlhF mutant of Pseudomonas putida,
the alternative sigma factor σN (σ54) has been proposed to play a key role in survival to …

The sigma 54 DNA‐binding domain includes a determinant of enhancer responsiveness

M Chaney, M Buck - Molecular microbiology, 1999 - Wiley Online Library
The bacterial σ54 protein associates with core RNA polymerase to form a holoenzyme that
functions in enhancer‐dependent transcription. Isomerization of the σ54 polymerase and its …

Proteome analysis of Escherichia coli W3110 expressing an heterologous sigma factor

P Baglioni, L Bini, S Liberatori, V Pallini, L Marri - Proteomics, 2003 - Wiley Online Library
The recombinant plasmid pASK18 carries a Streptomyces DNA fragment which includes an
open reading frame, designated psfS (putative sigma factor, Streptomyces), as its putative …

Role of Cell Surface Signaling in Proteolysis of an Alternative Sigma Factor in Pseudomonas aeruginosa

MR Spencer, PA Beare, IL Lamont - Journal of bacteriology, 2008 - Am Soc Microbiol
Alternative sigma factor proteins enable transcription of specific sets of genes in bacterial
cells. Their activities can be controlled by posttranslational mechanisms including inhibition …

The −35 sequence location and the Fis–sigma factor interface determine σS selectivity of the proP (P2) promoter in Escherichia coli

A Typas, S Stella, RC Johnson… - Molecular …, 2007 - Wiley Online Library
The P2 promoter of proP, encoding a transporter for proline and glycine betaine in
Escherichia coli, is a unique paradigm, where master regulators of different growth stages …

Integration of Global Regulation of Two Aromatic-Responsive σ54-Dependent Systems: a Common Phenotype by Different Mechanisms

CC Sze, LMD Bernardo, V Shingler - Journal of bacteriology, 2002 - Am Soc Microbiol
Pseudomonas-derived regulators DmpR and XylR are structurally and mechanistically
related σ54-dependent activators that control transcription of genes involved in catabolism of …

The alarmone (p)ppGpp mediates physiological‐responsive control at the σ54‐dependent Po promoter

CC Sze, V Shingler - Molecular microbiology, 1999 - Wiley Online Library
Transcription from the Pseudomonas‐derived σ54‐dependent Po promoter of the dmp
operon is mediated by the aromatic‐responsive regulator DmpR. However, physiological …

Mutations in the 1.1 Subdomain of Escherichia coli Sigma Factor σ70 and Disruption of its Overall Structure

V Gopal, D Chatterji - European journal of biochemistry, 1997 - Wiley Online Library
Among various group I sigma factors, two amino acids, Val55 and Ala59 are the conserved
amino acids in the 1.1 hydrophobic subdomain. These two sites have been mutated to …

Characterization of the PvdS‐regulated promoter motif in Pseudomonas syringae pv. tomato DC3000 reveals regulon members and insights regarding PvdS function …

B Swingle, D Thete, M Moll, CR Myers… - Molecular …, 2008 - Wiley Online Library
Bacteria that survive under variable conditions possess an assortment of genetic regulators
to meet these challenges. The group IV or extracytoplasmic function (ECF) sigma factors …

Genetic Evidence that Catabolites of the Entner-Doudoroff Pathway Signal C Source Repression of the σ54Pu Promoter of Pseudomonas putida

F Velázquez, I Di Bartolo, V De Lorenzo - Journal of bacteriology, 2004 - Am Soc Microbiol
Glucose and other C sources exert an atypical form of catabolic repression on the σ54-
dependent promoter Pu, which drives transcription of an operon for m-xylene degradation …