Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

J Deng, R Shoemaker, B Xie, A Gore… - Nature …, 2009 - nature.com
Current DNA methylation assays are limited in the flexibility and efficiency of characterizing
a large number of genomic targets. We report a method to specifically capture an arbitrary …

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

MP Ball, JB Li, Y Gao, JH Lee, EM LeProust… - Nature …, 2009 - nature.com
Studies of epigenetic modifications would benefit from improved methods for high-
throughput methylation profiling. We introduce two complementary approaches that use next …

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

SA Smallwood, HJ Lee, C Angermueller, F Krueger… - Nature …, 2014 - nature.com
We report a single-cell bisulfite sequencing (scBS-seq) method that can be used to
accurately measure DNA methylation at up to 48.4% of CpG sites. Embryonic stem cells …

Genome-scale DNA methylation maps of pluripotent and differentiated cells

A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna… - Nature, 2008 - nature.com
DNA methylation is essential for normal development,, and has been implicated in many
pathologies including cancer,. Our knowledge about the genome-wide distribution of DNA …

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

RA Harris, T Wang, C Coarfa, RP Nagarajan… - Nature …, 2010 - nature.com
Abstract Analysis of DNA methylation patterns relies increasingly on sequencing-based
profiling methods. The four most frequently used sequencing-based technologies are the …

Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells

SJ Shareef, SM Bevill, AT Raman, MJ Aryee… - Nature …, 2021 - nature.com
The biological roles of DNA methylation have been elucidated by profiling methods based
on whole-genome or reduced-representation bisulfite sequencing, but these approaches do …

Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing

H Guo, P Zhu, F Guo, X Li, X Wu, X Fan, L Wen… - Nature protocols, 2015 - nature.com
The heterogeneity of DNA methylation within a population of cells necessitates DNA
methylome profiling at single-cell resolution. Recently, we developed a single-cell reduced …

Human DNA methylomes at base resolution show widespread epigenomic differences

R Lister, M Pelizzola, RH Dowen, RD Hawkins, G Hon… - nature, 2009 - nature.com
DNA cytosine methylation is a central epigenetic modification that has essential roles in
cellular processes including genome regulation, development and disease. Here we …

Whole-genome bisulfite sequencing with improved accuracy and cost

M Suzuki, W Liao, F Wos, AD Johnston… - Genome …, 2018 - genome.cshlp.org
DNA methylation patterns in the genome both reflect and help to mediate transcriptional
regulatory processes. The digital nature of DNA methylation, present or absent on each …

The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation

L Zhao, M Sun, Z Li, X Bai, M Yu, M Wang… - Genome …, 2014 - genome.cshlp.org
The faithful transmission of DNA methylation patterns through cell divisions is essential for
the daughter cells to retain a proper cell identity. To achieve a comprehensive assessment …