A review of the pangenome: how it affects our understanding of genomic variation, selection and breeding in domestic animals?
Y Gong, Y Li, X Liu, Y Ma, L Jiang - Journal of Animal Science and …, 2023 - Springer
As large-scale genomic studies have progressed, it has been revealed that a single
reference genome pattern cannot represent genetic diversity at the species level. While …
reference genome pattern cannot represent genetic diversity at the species level. While …
Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary …
Y Zhou, L Yang, X Han, J Han, Y Hu, F Li… - Genome …, 2022 - genome.cshlp.org
A cattle pangenome representation was created based on the genome sequences of 898
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …
cattle representing 57 breeds. The pangenome identified 83 Mb of sequence not found in …
The application of genome-wide SNP genotyping methods in studies on livestock genomes
Animal genomics is currently undergoing dynamic development, which is driven by the
flourishing of high-throughput genome analysis methods. Recently, a large number of …
flourishing of high-throughput genome analysis methods. Recently, a large number of …
[HTML][HTML] Pangenome obtained by long-read sequencing of 11 genomes reveal hidden functional structural variants in pigs
YF Jiang, S Wang, CL Wang, RH Xu, WW Wang… - Iscience, 2023 - cell.com
Long-read sequencing (LRS) facilitates both the genome assembly and the discovery of
structural variants (SVs). Here, we built a graph-based pig pangenome by incorporating 11 …
structural variants (SVs). Here, we built a graph-based pig pangenome by incorporating 11 …
Towards the complete goat pan-genome by recovering missing genomic segments from the reference genome
R Li, W Fu, R Su, X Tian, D Du, Y Zhao, Z Zheng… - Frontiers in …, 2019 - frontiersin.org
It is broadly expected that next generation sequencing will ultimately generate a complete
genome as is the latest goat reference genome (ARS1), which is considered to be one of the …
genome as is the latest goat reference genome (ARS1), which is considered to be one of the …
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
Abstract The Bovine Pangenome Consortium (BPC) is an international collaboration
dedicated to the assembly of cattle genomes to develop a more complete representation of …
dedicated to the assembly of cattle genomes to develop a more complete representation of …
[HTML][HTML] Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa)
K Chen, T Baxter, WM Muir, MA Groenen… - International Journal of …, 2007 - ncbi.nlm.nih.gov
The pig, a representative of the artiodactyla clade, is one of the first animals domesticated,
and has become an important agriculture animal as one of the major human nutritional …
and has become an important agriculture animal as one of the major human nutritional …
Genome-wide SNP data unveils the globalization of domesticated pigs
B Yang, L Cui, M Perez-Enciso, A Traspov… - Genetics Selection …, 2017 - Springer
Background Pigs were domesticated independently in Eastern and Western Eurasia early
during the agricultural revolution, and have since been transported and traded across the …
during the agricultural revolution, and have since been transported and traded across the …
Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data
Pigs were domesticated independently in the Near East and China, indicating that a single
reference genome from one individual is unable to represent the full spectrum of divergent …
reference genome from one individual is unable to represent the full spectrum of divergent …
[HTML][HTML] Whole-genome resequencing analysis of Hanwoo and Yanbian cattle to identify genome-wide SNPs and signatures of selection
JW Choi, BH Choi, SH Lee, SS Lee, HC Kim, D Yu… - Molecules and cells, 2015 - Elsevier
Over the last 30 years, Hanwoo has been selectively bred to improve economically
important traits. Hanwoo is currently the representative Korean native beef cattle breed, and …
important traits. Hanwoo is currently the representative Korean native beef cattle breed, and …