The impact of surface area, volume, curvature, and lennard–jones potential to solvation modeling
… solvation models. Our numerical results reveal that the LJ potential plays a vital role in nonpolar
solvation modeling, … -based nonpolar solvation models offer some of the best solvation …
solvation modeling, … -based nonpolar solvation models offer some of the best solvation …
Calculation of solvation free energies using a density functional/molecular dynamics coupled potential
RV Stanton, DS Hartsough… - The Journal of Physical …, 1993 - ACS Publications
… and molecular mechanical computational models. Herein, we … -Jones parameters:10 The
solvation free energies for fluoride and sodium were also examined. In both cases the solvation …
solvation free energies for fluoride and sodium were also examined. In both cases the solvation …
Density functional theory of solvation and its relation to implicit solvent models
R Ramirez, D Borgis - The Journal of Physical Chemistry B, 2005 - ACS Publications
We describe a density functional theory approach to solvation in molecular solvents. The
solvation free energy of a complex solute can be obtained by direct minimization of a density …
solvation free energy of a complex solute can be obtained by direct minimization of a density …
Density-dependent solvation dynamics in a simple Lennard-Jones fluid
M Marques Martins, H Stassen - The Journal of chemical physics, 2003 - pubs.aip.org
… The exponential decay times for the solvation model are larger than for the solvation models
… In the case of the potential contribution to the Green–Kubo tcf for the shear viscosity, the …
… In the case of the potential contribution to the Green–Kubo tcf for the shear viscosity, the …
Predicting solvation free energies using parameter-free solvent models
… for computing solvation free energies in apolar solvents. Approximating solvents as
Lennard-Jones spheres and using atomistic solute models, we managed to obtain solvation free …
Lennard-Jones spheres and using atomistic solute models, we managed to obtain solvation free …
Non-zero Lennard-Jones parameters for the Toukan–Rahman water model: more accurate calculations of the solvation free energy of organic substances
A Nikitin - Journal of Computer-Aided Molecular Design, 2020 - Springer
… -mechanical models of hydrogen bonding improves the estimate of the solvation free energy
of … showed that using the same Lennard-Jones hydrogen parameters for the hydroxyl, …
of … showed that using the same Lennard-Jones hydrogen parameters for the hydroxyl, …
Where Lennard-Jones potentials fail: iterative optimization of ion–water pair potentials based on ab initio molecular dynamics data
MP Bernhardt, Y Nagata… - The Journal of Physical …, 2022 - ACS Publications
… rattling against the solvation shell, we also computed the cation–oxygen potential of mean
… the LJ 12–6 potential has several problems when used for modeling ion–water interactions …
… the LJ 12–6 potential has several problems when used for modeling ion–water interactions …
A computational investigation of thermodynamics, structure, dynamics and solvation behavior in modified water models
S Chatterjee, PG Debenedetti, FH Stillinger… - The Journal of …, 2008 - pubs.aip.org
… structural order in these models: Tetrahedral, with waterlike translational order for bent models
with H–O–H angles in excess of 100; and linear, with Lennard–Jones–like orientationally …
with H–O–H angles in excess of 100; and linear, with Lennard–Jones–like orientationally …
[HTML][HTML] Conformation of a flexible polymer in explicit solvent: Accurate solvation potentials for Lennard-Jones chains
MP Taylor, Y Ye, SR Adhikari - The Journal of chemical physics, 2015 - pubs.aip.org
… The approach is suggested by our observation that for interaction-site-chain models, the
average local structure for long chains is very similar to the corresponding local structure for …
average local structure for long chains is very similar to the corresponding local structure for …
Theoretical Study of Aqueous Solvation of K+ Comparing ab Initio, Polarizable, and Fixed-Charge Models
… in developing meaningful ion solvation models is the … Single ion solvation properties in
the infinite dilution limit must … a pairwise additive way using the Lennard-Jones potential. …
the infinite dilution limit must … a pairwise additive way using the Lennard-Jones potential. …
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