Analysis of transcripts and splice isoforms in Medicago sativa L. by single-molecule long-read sequencing

Y Chao, J Yuan, T Guo, L Xu, Z Mu, L Han - Plant Molecular Biology, 2019 - Springer
… To validate the accuracy of the splice isoforms detected with SMRT, we randomly selected
5 … size of the fragments were consistent with the splice isoforms identified from Iso-Seq data, …

Structure and alternative splicing of a heat shock transcription factor gene, MsHSF1, in Medicago sativa

Z He, R Xie, H Zou, Y Wang, J Zhu, G Yu - Biochemical and biophysical …, 2007 - Elsevier
… alternative-spliced isoforms [5], [6], [7], [8], [9], [10], [11], [12]. These alternative-spliced isoforms
are … The only example of alternative splicing inside the DBD is the splicing of SmHSF with …

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

JM Baek, P Han, A Iandolino, DR Cook - Plant molecular biology, 2008 - Springer
… As was observed in Medicago, the structure of AS isoforms is … in Medicago, with MtMYB1
exhibiting AS isoforms similar to … The fact that similar AS isoforms in Medicago, Arabidopsis …

[HTML][HTML] Maturation of the nodule-specific transcript MsHSF1c in Medicago sativa may involve interallelic trans-splicing

Z He, H Zou, Y Wang, J Zhu, G Yu - Genomics, 2008 - Elsevier
… alternative splicing events in various tissues. Here, we identified another spliced transcript
isoform… 827–828 for pre-mRNA splicing, we suggest that MsHSF1c may be generated by trans-…

Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)

CA Medina, DA Samac, LX Yu - Scientific reports, 2021 - nature.com
splicing pattern as predicted in the reference genome. Isoforms belong to NNIC, isoforms with
novel splice … , demonstrating the usefulness of Iso-Seq to discover new isoforms in alfalfa. …

The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies

JA O'Rourke, F Fu, B Bucciarelli, SS Yang, DA Samac… - BMC genomics, 2015 - Springer
… This methodology has also proven useful for discovery of novel transcripts (coding and
non-coding) and identification of alternative splice variants. The Illumina RNA-seq platform …

Reference nodule transcriptomes for Melilotus officinalis and Medicago sativa cv. Algonquin

R Huang, WA Snedden, GC Dicenzo - Plant Direct, 2022 - Wiley Online Library
… Contigs expected to represent splice variants of a single gene were merged into so-called
“supertranscripts” using the SuperTranscripts program, resulting in compressed assemblies of …

Comparative Proteomic Analysis Reveals Differential Root Proteins in Medicago sativa and Medicago truncatula in Response to Salt Stress

R Long, M Li, T Zhang, J Kang, Y Sun, L Cong… - Frontiers in Plant …, 2016 - frontiersin.org
… the proteome-level changes associated with salt stress response in Medicago sativa cv.
Zhongmu-1 and Medicago truncatula cv. Jemalong A17 roots. Our physiological and phenotypic …

Genome-wide identification and comparative analysis of alternative splicing across four legume species

Z Wang, H Zhang, W Gong - Planta, 2019 - Springer
… Relative to the predominant transcript isoform, AS can be divided into four main types,
intron … sativa) and clover (Trifolium sp.) as well as the model plant M. truncatula. Medicago

Cold-dependent alternative splicing of a Jumonji C domain-containing gene MtJMJC5 in Medicago truncatula

Y Shen, X Wu, D Liu, S Song, D Liu, H Wang - Biochemical and biophysical …, 2016 - Elsevier
splicing at the … splicing variants were sensitive to nonsense-mediated decay, the premature
termination codon-harboring alternative splicing variants sharing the 3′ alternative splicing