Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways

R Alves, E Vilaprinyo… - Biotechnology and …, 2008 - Taylor & Francis
There is a renewed interest in obtaining a systemic understanding of metabolism, gene
expression and signal transduction processes, driven by the recent research focus on …

Dynamic modeling of complex biological systems: a link between metabolic and macroscopic description

JE Haag, AV Wouwer, P Bogaerts - Mathematical biosciences, 2005 - Elsevier
In this study, a class of dynamic models based on metabolic reaction pathways is analyzed,
showing that systems with complex intracellular reaction networks can be represented by …

Bridging the gaps in systems biology

M Cvijovic, J Almquist, J Hagmar, S Hohmann… - Molecular Genetics and …, 2014 - Springer
Abstract Systems biology aims at creating mathematical models, ie, computational
reconstructions of biological systems and processes that will result in a new level of …

[图书][B] Kinetic modelling in systems biology

O Demin, I Goryanin - 2008 - books.google.com
With more and more interest in how components of biological systems interact, it is important
to understand the various aspects of systems biology. Kinetic Modelling in Systems Biology …

[HTML][HTML] Bioprocess systems engineering: transferring traditional process engineering principles to industrial biotechnology

M Koutinas, A Kiparissides, EN Pistikopoulos… - Computational and …, 2012 - Elsevier
The complexity of the regulatory network and the interactions that occur in the intracellular
environment of microorganisms highlight the importance in developing tractable mechanistic …

Metabolic modeling: a tool of drug discovery in the post-genomic era

EO Voit - Drug discovery today, 2002 - Elsevier
The Human Genome Project, DNA microarrays, proteome chips and metabolic profiles,
among others, are generating unprecedented amounts of valuable information about the …

Reaction-based models of biochemical networks

D Besozzi - Pursuit of the Universal: 12th Conference on …, 2016 - Springer
Mathematical modeling and computational analyses of biological systems generally pose to
modelers questions like:“Which modeling approach is suitable to describe the system we …

An integrated modeling-experimental strategy for the analysis of metabolic pathways

PM Schlosser, JE Bailey - Mathematical biosciences, 1990 - Elsevier
An inherent problem in studying the behavior of a metabolic pathway is the impossibility of
developing a complete, detailed model that includes all the cellular processes that have an …

Automated piecewise power-law modeling of biological systems

A Machina, A Ponosov, EO Voit - Journal of biotechnology, 2010 - Elsevier
Recent trends suggest that future biotechnology will increasingly rely on mathematical
models of the biological systems under investigation. In particular, metabolic engineering …

Systematic procedure for the reduction of complex biological reaction pathways and the generation of macroscopic equivalents

JE Haag, AV Wouwer, P Bogaerts - Chemical engineering science, 2005 - Elsevier
In this study, a class of dynamic models based on metabolic reaction pathways is analyzed,
showing that systems with complex intracellular reaction networks can be represented by …